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Issues: broadinstitute/seqr-loading-pipelines
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Figure out how to get
airflow
to use pipeline-runner
dataproc.
#943
opened Oct 29, 2024 by
bpblanken
Add
pipeline-runner
service account with appropriate permissions.
#941
opened Oct 29, 2024 by
bpblanken
Re-think delivery of
runs/metadata.json
and runs/validation_errors.json
.
#914
opened Sep 30, 2024 by
bpblanken
Add support for aneuploidy to the imputed sex validation.
enhancement
#906
opened Sep 23, 2024 by
bpblanken
Move sex checks out of data loading pipeline
blocked
Sex and Relatedness
#870
opened Aug 13, 2024 by
lynnpais
Add tests for the implemented migrations.
Code Quality
low priority
#862
opened Aug 5, 2024 by
bpblanken
Pipeline should check the integrity of the metadata.json generated during a run.
bug
#859
opened Aug 1, 2024 by
bpblanken
Audit of Sample QC Genetic Ancestry Imputation on gnomAD v2+CMG vs gnomAD v4 Model
Seqr Sample QC
#853
opened Jul 26, 2024 by
matren395
Map fields produced by seqr sample qc pipeline to UI fields in seqr.
Seqr Sample QC
#849
opened Jul 26, 2024 by
bpblanken
Lint/Refactor the
gencode
download.
Code Quality
Good First Issue
low priority
v3 pipeline
#609
opened Oct 31, 2023 by
bpblanken
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