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Pull requests: broadinstitute/gatk

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Pull requests list

GCP Batch-friendly Cromwell root detection [VS-1532] (#9069)
#9102 opened Feb 26, 2025 by mcovarr updated Feb 27, 2025
VS-1584 build variants docker on m4
#9099 opened Feb 19, 2025 by gbggrant updated Feb 25, 2025
CRAM 3.1 read support
#9095 opened Feb 11, 2025 by cmnbroad Draft updated Feb 11, 2025
Add samtools for file format testing.
#9093 opened Feb 10, 2025 by cmnbroad Draft updated Feb 10, 2025
Create tools for SV VCF cleaning
#8996 opened Oct 9, 2024 by kjaisingh Draft updated Feb 6, 2025
Add VAT clinvar reverse complement
#9070 opened Jan 7, 2025 by RoriCremer updated Jan 22, 2025
[DO NOT MERGE]
#9045 opened Nov 15, 2024 by jamesemery Approved updated Jan 21, 2025
Fixing what looks like a a bug in MendelianViolationEvaluator
#9080 opened Jan 15, 2025 by lbergelson updated Jan 15, 2025
Joel gsutil
#9052 opened Nov 21, 2024 by jmthibault79 Draft updated Nov 21, 2024
Yyu test 1
#9026 opened Oct 30, 2024 by yonghaoy Draft updated Oct 30, 2024
Funcotator - removing the required transcript file
#8863 opened Jun 5, 2024 by jonn-smith Draft updated Oct 18, 2024
FlowFeatureMapper speed improvements
#8982 opened Sep 16, 2024 by dror27 Draft updated Oct 4, 2024
Test out the preview version of the next GKL (DO NOT MERGE)
#8712 opened Mar 4, 2024 by droazen Loading… updated Sep 23, 2024
Add a --numeric-gt option to VariantsToTable
#8219 opened Feb 22, 2023 by lbergelson Loading… updated Aug 19, 2024
Engine read caching.
#4902 opened Jun 15, 2018 by cmnbroad Loading… updated Aug 13, 2024 Engine-Q12019
⛔ [DO NOT MERGE] ⛔ Fix partition grouping bug ⛔
#8785 opened Apr 21, 2024 by mcovarr Loading… updated Jul 11, 2024
Rc vs 1365 hatcher testing parquet
#8845 opened May 23, 2024 by RoriCremer Draft updated Jun 26, 2024
Added long read walkers from long-running branch.
#8799 opened Apr 29, 2024 by jonn-smith Loading… updated Jun 25, 2024
[DRAFT] Merge master to ah var store again [VS-1178]
#8890 opened Jun 24, 2024 by mcovarr Draft updated Jun 24, 2024
Add keep-contig-names parameter
#8865 opened Jun 6, 2024 by gokalpcelik Draft updated Jun 24, 2024
log4j minor bump to 2.17.1
#7642 opened Jan 19, 2022 by calbach Loading… updated May 29, 2024
Clarify Gnarly required annotations
#7854 opened May 17, 2022 by ldgauthier Loading… updated May 29, 2024
ProTip! What’s not been updated in a month: updated:<2025-01-27.