Dega 197 fix s st bug (#62)

* added buttons section to viz_state * added example notebook * v0.8.2 bug fix for sST * added example to documentation
broadinstitute · Jan 29, 2025 · d353837 · d353837
1 parent cca5181
commit d353837
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Showing 7 changed files with 152 additions and 3 deletions.
diff --git a/docs/assets/js/widget.js b/docs/assets/js/widget.js
diff --git a/docs/examples/brief_notebooks/Visium-HD_Landscape_Mouse_Lung_FF.ipynb b/docs/examples/brief_notebooks/Visium-HD_Landscape_Mouse_Lung_FF.ipynb
diff --git a/js/ui/text_buttons.js b/js/ui/text_buttons.js
@@ -150,6 +150,8 @@ export const make_button = (container, technology, text, color='blue', width=40,
     if (text === 'IMG') {
         if (technology === 'sst'){
             callback = (event) => sst_img_button_callback(event, inst_deck, layers_obj)
+
+            // console.log('here!!!!!!!!!!')
         } else {
             callback = (event) => ist_img_button_callback(event, inst_deck, layers_obj, viz_state)
         }

diff --git a/js/viz/landscape_sst.js b/js/viz/landscape_sst.js
@@ -54,6 +54,12 @@ export const landscape_sst = async (
 
     await set_dimensions(viz_state, base_url, 'cells')
 
+    viz_state.buttons = {}
+    viz_state.buttons.blue = '#8797ff'
+    viz_state.buttons.gray = 'gray'
+    viz_state.buttons.light_gray = '#EEEEEE'
+    viz_state.buttons.buttons = {}
+
     viz_state.genes = {}
     viz_state.genes.color_dict_gene = {}
     viz_state.genes.gene_names = []

diff --git a/mkdocs.yaml b/mkdocs.yaml
@@ -44,6 +44,7 @@ nav:
       - Landscape-Matrix View Xenium: examples/brief_notebooks/Landscape-Matrix_Xenium.ipynb
       - Pre-Process LandscapeFiles: examples/brief_notebooks/Pre-process_Xenium_V1_human_Pancreas_FFPE_outs.ipynb
       - UMAP-Cluster_Pancreas_Xenium: examples/brief_notebooks/UMAP-Cluster_Pancreas_Xenium.ipynb
+      - Visium-HD_Landscape_Mouse_Lung_FF: examples/brief_notebooks/Visium-HD_Landscape_Mouse_Lung_FF.ipynb
     # - Tutorials:
     #     - examples/Landscape_View_Xenium.ipynb
 

diff --git a/package.json b/package.json
@@ -1,6 +1,6 @@
 {
 	"name": "celldega",
-	"version": "0.8.1",
+	"version": "0.8.2",
 	"type": "module",
 	"scripts": {
 		"dev": "npm run build -- --sourcemap=inline --watch",

diff --git a/pyproject.toml b/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "celldega"
-version = "0.8.1"
+version = "0.8.2"
 dependencies = [
     "anywidget==0.9.6",
     "pandas~=2.2.2",