segmentation metrics plot dimensions fix

broadinstitute · Feb 5, 2025 · 9fe89c5 · 9fe89c5
1 parent d45434e
commit 9fe89c5
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Showing 2 changed files with 11 additions and 11 deletions.
diff --git a/notebooks/Segmentation_QC.ipynb b/notebooks/Segmentation_QC.ipynb
@@ -361,7 +361,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
+   "display_name": "celldega_env",
    "language": "python",
    "name": "python3"
   },

diff --git a/src/celldega/qc/__init__.py b/src/celldega/qc/__init__.py
@@ -253,11 +253,11 @@ def orthogonal_expression_calc(base_paths, cell_type_A_specific_genes,
 
         sns.set(style='white', rc={'figure.dpi': 250, 'axes.facecolor': (0, 0, 0, 0), 'figure.facecolor': (0, 0, 0, 0)})
 
-        height_of_each_facet = 3  
-        aspect_ratio_of_each_facet = 1  
+        height_of_each_facet = 3
+        aspect_ratio_of_each_facet = 1
 
         g = sns.FacetGrid(results, col="Technology", sharex=False, sharey=False,
-                        margin_titles=True, despine=True, col_wrap=3,
+                        margin_titles=True, despine=True, col_wrap=4,
                         height=height_of_each_facet, aspect=aspect_ratio_of_each_facet,
                         gridspec_kws={"wspace": 0.01})
 
@@ -295,17 +295,17 @@ def orthogonal_expression_calc(base_paths, cell_type_A_specific_genes,
                    for gene in pair]
     })
 
-    fig, ax = plt.subplots(figsize=(16, 10))
+    fig, ax = plt.subplots(figsize=(10, 6))
 
     sns.barplot(data=orthogonal_data, x='Technology', y='Count', hue='Category', ax=ax)
 
-    ax.set_title(f'Orthogonal Expression: Classified {cell_A_name} and {cell_B_name} Expressing Opposite Gene Type', fontsize=24)
-    ax.set_xlabel('Technology', fontsize=22, labelpad=15)
-    ax.set_ylabel('Proportion of Cells', fontsize=22, labelpad=15)
-    plt.yticks(fontsize=22)
-    plt.xticks(fontsize=22)
+    ax.set_title(f'Orthogonal Expression: Classified {cell_A_name} and {cell_B_name} Expressing Opposite Gene Type', fontsize=15)
+    ax.set_xlabel('Technology', fontsize=15, labelpad=10)
+    ax.set_ylabel('Proportion of Cells', fontsize=15, labelpad=10)
+    plt.yticks(fontsize=15)
+    plt.xticks(fontsize=15)
 
-    ax.legend(title='Category', title_fontsize=20, bbox_to_anchor=(1.05, 1), loc='upper left', facecolor="white", edgecolor="black", fontsize=20)
+    ax.legend(title='Category', title_fontsize=15, bbox_to_anchor=(1.05, 1), loc='upper left', facecolor="white", edgecolor="black", fontsize=15)
 
     plt.tight_layout()
     plt.show()