created the output folder before running QUICviz

broadinstitute · Apr 19, 2024 · d78b5b0 · d78b5b0
1 parent 045b6da
commit d78b5b0
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/PECGS-QUICviz/QUICviz.wdl b/PECGS-QUICviz/QUICviz.wdl
@@ -54,6 +54,7 @@ task QUICviz {
     }
     command <<<
         set -e
+        mkdir -p /BaseImage/CMI_QUICviz/outputs/
 
         Rscript /BaseImage/CMI_QUICviz/scripts/CMI_QUICviz_v0.3.R \
             --sample ~{sampleID} \