created a directory for output

broadinstitute · Jun 17, 2024 · 24c88a6 · 24c88a6
1 parent 5775017
commit 24c88a6
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/CoverageProfiler/CoverageProfiler.wdl b/CoverageProfiler/CoverageProfiler.wdl
@@ -142,8 +142,9 @@ workflow coverageProfile {
             String samtools_docker = "euformatics/samtools:1.20"
     }
     command <<<
-        # Create directories for output
+        # Create directories for input & output
         mkdir input
+        mkdir output
         readlink -f ~{alignedBam} > input/bam_path.txt
 
         # Run samtools depth