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Bittremieux Lab

The Bittremieux Lab at the University of Antwerp

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  1. spectrum_utils spectrum_utils Public

    Python package for efficient mass spectrometry data processing and visualization

    Python 161 30

  2. ANN-SoLo ANN-SoLo Public

    Spectral library searching using approximate nearest neighbor techniques.

    Jupyter Notebook 48 21

  3. falcon falcon Public

    Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.

    Python 33 11

  4. GLEAMS GLEAMS Public

    GLEAMS is a Learned Embedding for Annotating Mass Spectra.

    Python 26 10

  5. denovo_benchmarks denovo_benchmarks Public

    HTML 19 12

  6. simba simba Public

    Jupyter Notebook 8

Repositories

Showing 10 of 11 repositories
  • denovo_benchmarks Public
    bittremieuxlab/denovo_benchmarks’s past year of commit activity
    HTML 19 12 12 17 Updated Jan 10, 2026
  • simba Public
    bittremieuxlab/simba’s past year of commit activity
    Jupyter Notebook 8 Apache-2.0 0 1 3 Updated Jan 9, 2026
  • casanovo-scaling Public Forked from Noble-Lab/casanovo

    De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

    bittremieuxlab/casanovo-scaling’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 53 0 0 Updated Jan 9, 2026
  • falcon Public

    Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.

    bittremieuxlab/falcon’s past year of commit activity
    Python 33 BSD-3-Clause 11 8 2 Updated Jan 6, 2026
  • spectrum_utils Public

    Python package for efficient mass spectrometry data processing and visualization

    bittremieuxlab/spectrum_utils’s past year of commit activity
    Python 161 Apache-2.0 30 8 (1 issue needs help) 3 Updated Dec 18, 2025
  • positional-isomer-distinguishability Public
    bittremieuxlab/positional-isomer-distinguishability’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Nov 26, 2025
  • gnps-rdd Public Forked from global-foodomics/gfop

    Reference data-driven metabolomics using the GNPS platform

    bittremieuxlab/gnps-rdd’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 2 5 0 Updated Nov 4, 2025
  • MassIVE-KB-spectra-extractor Public

    A Nextflow pipeline for extracting spectra from MassIVE-KB

    bittremieuxlab/MassIVE-KB-spectra-extractor’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Oct 14, 2025
  • ANN-SoLo Public

    Spectral library searching using approximate nearest neighbor techniques.

    bittremieuxlab/ANN-SoLo’s past year of commit activity
    Jupyter Notebook 48 Apache-2.0 21 14 1 Updated Apr 30, 2025
  • MTL-peptide-property-prediction Public

    All scripts to reproduce the results from the 'Machine learning strategies to tackle data challenges in mass spectrometry-based proteomics' study. Data and pretrained models are available at https://zenodo.org/doi/10.5281/zenodo.11084462

    bittremieuxlab/MTL-peptide-property-prediction’s past year of commit activity
    Python 1 1 0 0 Updated Jul 16, 2024
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