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<b>The dynamic Python-based version of the website. The Django framework is used as the back-end. Data about organisms, genes, genomes, locus_tags and KEGG pathways are stored in a database (in a cloud-based Azure Cosmos DB for MongoDB). The Microsoft Azure Blob Storage is still used as a data lake to store static unstructured or semi-structured data, e.g., plots, bibliome and phylogenetic trees (i.e., data that are not used by search or any other scripts generating dynamic content).</b> | ||
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## Contributors | ||
- Front-end, analytics, LLM, data processing via a bioinformatics pipeline: Pascal A. Pieters, [email protected]; Binhuan Sun, [email protected] | ||
- Back-end, ETL pipeline, the website and vector databases, CI/CD pipeline, the github repo maintenance, versioning and backup systems, infrastructure, DevOps: Pascal A. Pieters, [email protected] | ||
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- Front-end, analytics, LLM, data processing via a bioinformatics pipeline: Binhuan Sun (v1.0.0), Pascal A. Pieters (>=v2.0.0) | ||
- Back-end, ETL pipeline, the website and vector databases, CI/CD pipeline, the github repo maintenance, versioning and backup systems, infrastructure, DevOps: Liubov Pashkova (v2.0.0) Pascal A. Pieters (>=v3.0.0) | ||
For more info, contact Pascal A. Pieters, [email protected] | ||
## Server Configuration | ||
Tested on Linux Ubuntu 20.04 (may need tweaks for other systems). | ||
Tested on Linux Ubuntu 20.04 and 24.04 (may need tweaks for other systems). | ||
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Min hardware requirements solely for the PanKB website deployment (excl. the PanKB DB, ETL and AI Assistant app): | ||
- 4GB RAM | ||
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