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Add predicted WikiPathways orthologs#59

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cthoyt merged 6 commits into
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add-wikipathways-orthologs
May 23, 2022
Merged

Add predicted WikiPathways orthologs#59
cthoyt merged 6 commits into
masterfrom
add-wikipathways-orthologs

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@cthoyt cthoyt commented Aug 19, 2021

This PR adds predicted orthology relationships between WikiPathways entries. The existence of these entries is no surprise, since they actually automatically generate them based on gene orthologies.

This is a bit different than #38 because it is going into predictions instead of direct mappings. It also has a much smaller scope.

I gave a presentation on this a few months ago to the WikiPathways developer meeting .

The WikiPathways ones are highly likely to be correct, but should still go through a round of curation. Since there could be tons of variability in names in WikiPathways, it might be good to also predict mappings through paths like WP1 speciesSpecific X speciesSpecific WP2

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cthoyt commented Aug 19, 2021

@bgyori I've also done some manual curation that I can either push with this PR if you think it's all in order, or as a separate one later

@cthoyt cthoyt requested a review from bgyori August 19, 2021 09:31
@cthoyt cthoyt merged commit 223227a into master May 23, 2022
@cthoyt cthoyt deleted the add-wikipathways-orthologs branch May 23, 2022 09:00
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