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Add generalizable MeSH mappings#17

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cthoyt wants to merge 17 commits into
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mesh-mgi-map
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Add generalizable MeSH mappings#17
cthoyt wants to merge 17 commits into
mainfrom
mesh-mgi-map

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@cthoyt
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@cthoyt cthoyt commented Dec 16, 2020

  • Map MGI gene identifiers to UniProt
  • Identify other organisms available from MeSH

@bgyori
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bgyori commented Dec 16, 2020

Doesn't UniProt provide MGI mappings though? I'm pretty sure it does.

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bgyori commented Dec 16, 2020

@cthoyt
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cthoyt commented Dec 16, 2020

UniProt mapping is the big TODO - we can do lots of different automated mapping generations with the last push

@cthoyt cthoyt changed the title Add MeSH mappings for mouse proteins Add generalizable MeSH mappings Dec 16, 2020
@bgyori
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bgyori commented Dec 16, 2020

I might be missing something but I think UniProt provides mappings to most relevant organism specific databases.

@cthoyt
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cthoyt commented Dec 16, 2020

@bgyori yes they do! I haven't written code for this, so maybe you could help. I think you're working on improving ProtMapper to do this right now, right?

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