Phylonco v1.0.0

kche309 released this 13 Apr 08:54

· 226 commits to master since this release

702757d

Requirements

BEAST version 2.7.3 or greater
BEASTLabs version 2.0.0 or greater
lphybeast version 1.0.0 or greater

Release notes

Beagle support added in BeagleTreeLikelihoodWithError class
To run Beagle with GPU use ./beast -beagle_GPU <beast xml>

This release is not compatible with BEAST v2.6

Setup instructions

BEAST2 with phylonco:

See the user guide https://github.com/bioDS/beast-phylonco/blob/8cb0a404b9c5d8e76b65a6c30177d17395d52b3a/README.md

LPhy and LPhyBeast:

See LPhy and LPhyBEAST setup
See Phylonco LPhy extension setup
LPhy documentation phylonco-lphy/doc/index.md
Examples see phylonco-lphy-examples.zip

Assets 7