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Github Actions doc build after commit 9afe9ca
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bashtage committed Oct 12, 2023
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10 changes: 5 additions & 5 deletions devel/_modules/arch/bootstrap/base.html
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<h1>Source code for arch.covariance.kernel</h1><div class="highlight"><pre>
<span></span><code><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">annotations</span>

<span class="kn">from</span> <span class="nn">arch.compat.numba</span> <span class="kn">import</span> <span class="n">jit</span>

<span class="kn">from</span> <span class="nn">abc</span> <span class="kn">import</span> <span class="n">ABC</span><span class="p">,</span> <span class="n">abstractmethod</span>
<span class="kn">from</span> <span class="nn">functools</span> <span class="kn">import</span> <span class="n">cached_property</span>
<span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">SupportsInt</span><span class="p">,</span> <span class="n">cast</span>
Expand Down Expand Up @@ -505,6 +507,14 @@ <h1>Source code for arch.covariance.kernel</h1><div class="highlight"><pre>



<span class="nd">@jit</span><span class="p">(</span><span class="n">nopython</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
<span class="k">def</span> <span class="nf">_cov_jit</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">num_weights</span><span class="p">,</span> <span class="n">w</span><span class="p">,</span> <span class="n">x</span><span class="p">):</span>
<span class="n">oss</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="n">k</span><span class="p">,</span> <span class="n">k</span><span class="p">))</span>
<span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">num_weights</span><span class="p">):</span>
<span class="n">oss</span> <span class="o">+=</span> <span class="n">w</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="n">i</span><span class="p">:]</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">x</span><span class="p">[:</span><span class="o">-</span><span class="n">i</span><span class="p">])</span> <span class="o">/</span> <span class="n">df</span>
<span class="k">return</span> <span class="n">oss</span>


<span class="k">class</span> <span class="nc">CovarianceEstimator</span><span class="p">(</span><span class="n">ABC</span><span class="p">):</span>
<span class="w"> </span><span class="sa">r</span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> %(kernel_name)s kernel covariance estimation.</span>
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<span class="sd"> --------</span>
<span class="sd"> CovarianceEstimate</span>
<span class="sd"> &quot;&quot;&quot;</span>
<span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_x</span><span class="p">)</span>
<span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">ascontiguousarray</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_x</span><span class="p">)</span>
<span class="n">k</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
<span class="n">df</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_df</span>
<span class="n">sr</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">x</span> <span class="o">/</span> <span class="n">df</span>
<span class="n">w</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">kernel_weights</span>
<span class="n">num_weights</span> <span class="o">=</span> <span class="n">w</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
<span class="n">oss</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="n">k</span><span class="p">,</span> <span class="n">k</span><span class="p">))</span>
<span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">num_weights</span><span class="p">):</span>
<span class="n">oss</span> <span class="o">+=</span> <span class="n">w</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="n">i</span><span class="p">:]</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">x</span><span class="p">[:</span><span class="o">-</span><span class="n">i</span><span class="p">])</span> <span class="o">/</span> <span class="n">df</span>

<span class="n">oss</span> <span class="o">=</span> <span class="n">_cov_jit</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">num_weights</span><span class="p">,</span> <span class="n">w</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>

<span class="n">labels</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_x_orig</span><span class="o">.</span><span class="n">columns</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_x_orig</span><span class="p">,</span> <span class="n">DataFrame</span><span class="p">)</span> <span class="k">else</span> <span class="kc">None</span>
<span class="k">return</span> <span class="n">CovarianceEstimate</span><span class="p">(</span><span class="n">sr</span><span class="p">,</span> <span class="n">oss</span><span class="p">,</span> <span class="n">labels</span><span class="p">)</span>
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<header class="md-header" data-md-component="header">
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<a href="../../../index.html" title="arch v6.2.1 (+16)" class="md-nav__button md-logo" aria-label="arch v6.2.1 (+16)" data-md-component="logo">
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<a href="../../../index.html" title="arch v6.2.1 (+6)" class="md-header__button md-logo" aria-label="arch v6.2.1 (+6)" data-md-component="logo">
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<header class="md-header" data-md-component="header">
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<header class="md-header" data-md-component="header">
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