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S1: integrate EEG methods scope and verify merged CI - #72

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aurascoper wants to merge 89 commits into

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integration/trunk-2026-09

Commits on Jul 21, 2026
Commits on Jul 22, 2026
Commits on Jul 23, 2026
- docs(eeg): scope mathematics, physics, and methods research
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- feat(eeg): add offline encoder benchmark contract
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- docs(eeg): record scope contract audit
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- docs(architecture): repair principles links
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- fix(eeg): validate encoder pilot capture integrity
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- feat(logging): quarantine dialectic replay corpus
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- feat(logging): add local dialectic review
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- fix(logging): fail closed on review citations
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- feat(review): add fail-closed local review cascade
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- docs(review): record local review governance
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Commits on Jul 24, 2026
- fix(runtime): fail closed when prompt resources are unavailable
  
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- fix(packaging): include SwiftPM resource bundles in macOS app
  
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Commits on Jul 25, 2026
- fix(runtime): resolve Claude CLI without env-wrapper execution
  
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- refactor(app): make fail-closed runtime resolution testable
  
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- test(runtime): pin the R2 call site and remove vacuous assertions
  
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- Merge PR #31: A1 runtime-trust foundation (R2 + R7)
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- feat(runtime): add resolved identity and readiness probing
  
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- fix(dialectic): resolve Witness with a distinct prompt runtime
  
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- fix(ui): display actual runtime provider and readiness
  
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Commits on Jul 26, 2026
- fix(runtime): distinguish unresolved locality and canonical model identity
  
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- fix(telemetry): persist Witness runtime fingerprint
  
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- fix(ui): retain failed runtime identity after loop disablement
  
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  4c5e275
- test(runtime): record packaged Apple Silicon A2 acceptance
  
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Commits on Jul 27, 2026
- Merge pull request #23 from aurascoper/fix/eeg-protocol-v1
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- Merge pull request #24 from aurascoper/fix/eeg-protocol-v1-contract
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  47dfdfe
- Merge pull request #25 from aurascoper/feat/dialectic-corpus-quarantine
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- feat(eeg): add fail-closed structured-state shadow artifacts
  
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- fix(eeg): resolve NumPy trapezoid compatibility lazily
  
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- ci: run the Python contract suites
  
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- ci: reference issue #38 for the deselected eval cases
  
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- Merge pull request #36 from aurascoper/fix/numpy-trapezoid-compat
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- Merge pull request #37 from aurascoper/ci/python-contract-suites
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- Merge docs/eeg-methods-scope into fix/structured-state-shadow-contract
  
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- fix(eeg): enforce immutable and provenance-consistent shadow replay
  
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- Merge pull request #35 from aurascoper/fix/structured-state-shadow-contract
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- Merge docs/eeg-methods-scope into feat/local-dialectic-review-clean
  
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- test(review): publish shadow replay artifacts outside the fixture root
  
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- Merge pull request #33 from aurascoper/feat/local-dialectic-review-clean
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- fix(eval): stop zero-variance Cohen's d from reporting no effect
  
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- test(eval): use an attainable exact Mann-Whitney significance case
  
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- test(eval): pin biased linear CKA behavior across sample regimes
  
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- Merge pull request #39 from aurascoper/fix/eval-stats-zero-variance-cohens-d
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- Merge pull request #40 from aurascoper/test/mann-whitney-attainable-significance
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- Merge pull request #41 from aurascoper/test/biased-cka-null-regimes
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- Merge current EEG methods staging into A2 final acceptance
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- ci: run A2 app and session suites
  
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- Merge pull request #42 from aurascoper/ci/a2-app-session-suites
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- Merge A2 app/session CI prerequisite into A2 final acceptance
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- fix(runtime): distinguish configured from verified readiness
  
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- fix(runtime): report unverified Claude checks as not run
  
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Commits on Jul 28, 2026
- fix(runtime): publish Claude metadata in the live app
  
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- docs(evaluation): record A2 final-head acceptance
  
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- Merge PR #32: A2 role-specific runtime identity and readiness
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Commits on Sep 29, 2026
- merge: S1, origin/docs/eeg-methods-scope into the integration trunk
  
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