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44 changes: 38 additions & 6 deletions src/schnetpack/datasets/rmd17.py
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@
import tempfile
import tarfile
from typing import List, Optional, Dict
from urllib import request as request

from urllib.request import Request, urlopen
from urllib.error import URLError, HTTPError
import numpy as np
from ase import Atoms

Expand Down Expand Up @@ -194,13 +194,45 @@ def _download_data(
):
logging.info("Downloading {} data".format(self.molecule))
raw_path = os.path.join(tmpdir, "rmd17")
tar_path = os.path.join(tmpdir, "rmd17.tar.gz")
url = "https://figshare.com/ndownloader/files/23950376"
request.urlretrieve(url, tar_path)
tar_path = os.path.join(tmpdir, "rmd17.tar")
urls = [
"https://figshare.com/ndownloader/files/23950376",
"https://archive.materialscloud.org/records/pfffs-fff86/files/rmd17.tar.bz2?download=1", # Fallback mirror
]

downloaded = False
last_error = None

for u in urls:
try:
logging.info(f"Downloading from: {u}")
req = Request(u)
with urlopen(req, timeout=600) as resp, open(tar_path, "wb") as f:
shutil.copyfileobj(resp, f)

size = os.path.getsize(tar_path)
ctype = (resp.headers.get("Content-Type") or "").lower()

if size == 0 or "text/html" in ctype:
raise RuntimeError(
f"Blocked or invalid download (size={size}, Content-Type={ctype})"
)
logging.info(f"Download successful rMD17.")
downloaded = True
break

except (HTTPError, URLError, RuntimeError) as e:
last_error = e
logging.warning(f"Download failed from {u}: {e}")

if not downloaded:
raise RuntimeError(
"rMD17 download failed from both sources. " f"Error: {last_error}"
)
logging.info("Done.")

logging.info("Extracting data...")
tar = tarfile.open(tar_path)
tar = tarfile.open(tar_path, mode="r:*")
tar.extract(
path=raw_path, member=f"rmd17/npz_data/{self.datasets_dict[self.molecule]}"
)
Expand Down