PPI search benchmark released

You can now download a benchmark for PPI search from Zenodo via

from ppiref.utils.misc import download_from_zenodo
download_from_zenodo('benchmark_similarity_6A.zip') 

The benchmark contains 2M PPI pairs originating from 50K PDB entries. The files also contain similarity calculation results for iAlign and iDist.

v1.3.0

• Optimizations of the ppiref.comparison module.
• Implementation of a wrapper for Foldseek-Multimer (a.k.a Foldseek-MM) to compare PPI interfaces.

Full Changelog: v1.2.0...v1.3.0

v1.2.0

What's Changed

• Docs
• New datasets: all 10A PPIs from PDB, all 10A PPIs from PDB-REDO
• Minor improvements and fixes

Full Changelog: v1.1.0...v1.2.0

v1.1.0

• PPIRef dataset on Zenodo (all 6A dimeric interfaces from PDB)
• Implemented search for similar PPIs in PDB by query sequence or interface structure
• Minor fixes and improvements

Full Changelog: v1.0.0...v1.1.0

v1.0.0

Full Changelog: https://github.com/anton-bushuiev/PPIRef/commits/v1.0.0