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@andersen-lab

Andersen Laboratory @ Scripps Research

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  1. HCoV-19-Genomics HCoV-19-Genomics Public

    SARS-CoV-2 genomics

    15 5

  2. ivar ivar Public

    Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    C++ 119 42

  3. Freyja Freyja Public

    Depth-weighted De-Mixing

    HTML 108 33

  4. avian-influenza avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    Shell 29 7

  5. MPXV_wastewater_sequencing MPXV_wastewater_sequencing Public

    Python

Repositories

Showing 10 of 57 repositories
  • Freyja-nf Public Forked from andersen-lab/Freyja-SRA

    nextflow pipeline for NICD wastewater surveillance

    andersen-lab/Freyja-nf’s past year of commit activity
    Nextflow 0 GPL-3.0 4 0 0 Updated Mar 10, 2025
  • Freyja-SRA Public
    andersen-lab/Freyja-SRA’s past year of commit activity
    Python 4 GPL-3.0 4 0 0 Updated Mar 10, 2025
  • Freyja-data Public

    Previous versions of Freyja barcodes and metadata files

    andersen-lab/Freyja-data’s past year of commit activity
    Python 4 0 0 0 Updated Mar 8, 2025
  • Freyja Public

    Depth-weighted De-Mixing

    andersen-lab/Freyja’s past year of commit activity
    HTML 108 BSD-2-Clause 33 3 1 Updated Mar 7, 2025
  • SARS-CoV-2_WasteWater_San-Diego Public
    andersen-lab/SARS-CoV-2_WasteWater_San-Diego’s past year of commit activity
    Python 12 3 0 0 Updated Mar 5, 2025
  • sd_ww_processing Public

    repo for data storage and shared analyses

    andersen-lab/sd_ww_processing’s past year of commit activity
    Python 0 0 0 0 Updated Mar 5, 2025
  • avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    andersen-lab/avian-influenza’s past year of commit activity
    Shell 29 7 2 0 Updated Mar 5, 2025
  • bjorn Public
    andersen-lab/bjorn’s past year of commit activity
    Python 22 GPL-3.0 4 11 2 Updated Mar 5, 2025
  • MixAmp Public

    Amplicon read simulator

    andersen-lab/MixAmp’s past year of commit activity
    Python 1 0 0 0 Updated Mar 3, 2025
  • ivar Public Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    andersen-lab/ivar’s past year of commit activity
    C++ 119 GPL-3.0 44 39 9 Updated Feb 25, 2025
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