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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,8 @@

import os

from compass.io import symlink
from compass.job import write_job_script
from compass.step import Step


Expand Down Expand Up @@ -98,3 +100,19 @@ def setup(self):

print(f'Setting config_do_restart = .true. in {namelist_path}')
_set_restart_in_namelist(namelist_path)

# 128 matches a typical HPC node count; user can override via config
self.ntasks = self.config.getint('ensemble', 'ntasks', fallback=128)
self.min_tasks = self.ntasks

run_name = f'run{self.run_num:03}'
self.config.set('job', 'job_name', f'uq_{run_name}_restart')
machine = self.config.get('deploy', 'machine')
write_job_script(self.config, machine,
target_cores=self.ntasks, min_cores=self.min_tasks,
work_dir=self.work_dir)

if 'LOAD_COMPASS_ENV' in os.environ:
script_filename = os.environ['LOAD_COMPASS_ENV']
symlink(script_filename, os.path.join(self.work_dir,
'load_compass_env.sh'))