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Merge Olga's changes#260

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sa501428 wants to merge 13 commits intoaidenlab:mainaidenlab/juicer:mainfrom sa501428:encodesa501428/juicer:encodeCopy head branch name to clipboard

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Commits on Jan 10, 2022

• Merge pull request #1 from aidenlab/encode

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Commits on Jan 18, 2022

• First path adding stats shortcuts

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  b5c2023

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• cleaning up stats calculation

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Commits on Jan 20, 2022

• add haploid accessibility to postprocessing

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• Last sync before breaking up

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  365a28f

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• duplicate code to extract megafication

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  128effd

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• First path for megafy script

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  7122b9c

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• description tweak

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• rename option name for stats inferrence

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• cast mapq as int in bam to mnd

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Commits on Jan 21, 2022

• remove 1bp resolution from defaults

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Commits on Jan 23, 2022

• Merge pull request #2 from dudcha/encode-mega

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• Merge branch 'main' into encode

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