scelephant v0.2.7

first official release

scelephant v0.2.3 (version used for the PBMC3k alignment tutorials)

All file operations are handled by a pool of managed processes created by spawning, which make them safe for fetching and processing remote data files asynchronously.

release 0.0.10 stable version used to construct ELDB.v20221214

Key Updates:

1. Amazon S3 file system is now supported. A RamData object stored in Amazon S3 can be analyzed as if it is in the local file system.

2. Synchronization of simultaneous modification attempts through file-locking

• a class ZarrSpinLockServer was implemented to support file-locking.

release 0.0.7 stable version used to construct SC-Elephant DB v0.0.0

release 0.0.7 stable version used to construct SC-Elephant DB v0.0.0

features:

• "combined" mode
  combined analysis of multiple RamData objects as components of a larger, combined RamData.

• Embedding to reference data:
  Deep-learning based embedding/classifier
  KNN-index based embedding/classifier

v0.0.5 (first stable version)

performance was optimized to match that of scanpy for 1M ~ 10M cells

proof-of-concept-release

this version was used for the comparison with different single-cell data analysis platforms (Scanpy, Seurat, and Monocle3) for the memory consumption benchmark of the platforms.