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@ag-computational-bio

Bioinformatics and Systems Biology @ JLU Gießen

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  1. bakta Public

    Forked from oschwengers/bakta

    Rapid & standardized annotation of bacterial genomes & plasmids

    Python 1

  2. ReadXplorer Public

    ReadXplorer - Visualization and Analysis of Mapped Sequences

    Java 3

  3. asap Public

    Forked from oschwengers/asap

    A scalable bacterial genome assembly, annotation and analysis pipeline

    Groovy 2

  4. BioDataDBCLI Public

    Go 1

  5. ecf_classify Public

    Forked from r-mllr/ecf_classify

    Command-line tool for classifying proteins into ECFs

    Ruby

Repositories

Showing 10 of 27 repositories
  • bakta-web-ui Public

    UI for Bakta web app

    TypeScript 3 GPL-3.0 1 2 0 Updated Mar 5, 2025
  • bakta-web-backend Public

    Backend to schedule bakta jobs on a Kubernetes cluster

    Rust 1 GPL-3.0 0 2 0 Updated Mar 5, 2025
  • sorfdb Public

    Workflows for the sORFdb database

    Jupyter Notebook 2 AGPL-3.0 0 0 0 Updated Mar 5, 2025
  • bakrep Public
    Python 4 GPL-3.0 0 1 0 Updated Feb 17, 2025
  • bakta-docs Public
    1 GPL-3.0 0 0 0 Updated Jan 8, 2025
  • bakrep-web Public

    The user interface for bakrep

    HTML 3 0 5 0 Updated Dec 4, 2024
  • gitops-demo Public

    de.NBI cloud usermeeting GitOps demonstrations

    0 2 0 0 Updated Dec 2, 2024
  • bakta Public Forked from oschwengers/bakta

    Rapid & standardized annotation of bacterial genomes & plasmids

    Python 1 GPL-3.0 59 0 0 Updated Oct 29, 2024
  • bakrep-cli Public

    Commandline tool to (batch) download bakrep datasets

    Python 5 GPL-3.0 0 1 0 Updated Sep 23, 2024
  • ReadXplorer Public

    ReadXplorer - Visualization and Analysis of Mapped Sequences

    Java 3 GPL-3.0 0 6 0 Updated Nov 30, 2023
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