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1. MNM_SelectionTests MNM_SelectionTests Public

   Forked from JoeThorntonLab/MNM_SelectionTests

   Tests of selection incorporating multinucleotide mutations

   HyPhy 1

2. SACNAS_fun SACNAS_fun Public

   This repo contains some simple and fun examples for our SACNAS event!

   Python 1

3. ShellScripting ShellScripting Public

   A useful bash pipeline to align mate pairs

   Shell

4. Cooperative-Binding-Modeling Cooperative-Binding-Modeling Public

   R code to jointly estimate using non-linear regression transcription-factor DNA binding affinities and cooperative binding

   R

5. Genome-assembly-and-pop-gen-stuff Genome-assembly-and-pop-gen-stuff Public

   Perl

6. Multinucleotide-mutations-modeling Multinucleotide-mutations-modeling Public

   Modeling complex mutations using a phylogenetic model, and testing for natural selection

   HyPhy