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cbenv.yaml
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name: cellbender
channels:
- anaconda
- defaults
- conda-forge
- https://repo.anaconda.com/pkgs/main
- https://repo.anaconda.com/pkgs/r
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _sysroot_linux-64_curr_repodata_hack=3=haa98f57_10
- anndata=0.9.2=pyhd8ed1ab_0
- arpack=3.9.1=nompi_hf03ea27_102
- binutils_impl_linux-64=2.40=h5293946_0
- binutils_linux-64=2.40.0=hc2dff05_2
- blas=1.0=openblas
- blosc=1.21.3=h6a678d5_0
- bottleneck=1.3.7=py38ha9d4c09_0
- brotli=1.1.0=hb9d3cd8_2
- brotli-bin=1.1.0=hb9d3cd8_2
- brotli-python=1.0.9=py38h6a678d5_8
- bzip2=1.0.8=h5eee18b_6
- c-ares=1.34.4=hb9d3cd8_0
- c-blosc2=2.12.0=h80c7b02_0
- ca-certificates=2025.1.31=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- certifi=2024.8.30=py38h06a4308_0
- charset-normalizer=3.3.2=pyhd3eb1b0_0
- colorama=0.4.6=pyhd8ed1ab_0
- contourpy=1.1.1=py38h7f3f72f_1
- cudatoolkit=11.8.0=h6a678d5_0
- cudnn=8.9.2.26=cuda11_0
- cupti=11.8.0=he078b1a_0
- cycler=0.12.1=pyhd8ed1ab_0
- filelock=3.13.1=py38h06a4308_0
- fonttools=4.53.1=py38h2019614_0
- freetype=2.12.1=h267a509_2
- fsspec=2024.6.1=py38h06a4308_0
- gcc_impl_linux-64=11.2.0=h1234567_1
- gcc_linux-64=11.2.0=h5c386dc_2
- get-annotations=0.1.2=pyhd8ed1ab_0
- glpk=5.0=h445213a_0
- gmp=6.3.0=hac33072_2
- gmpy2=2.1.2=py38heeb90bb_0
- gxx_impl_linux-64=11.2.0=h1234567_1
- gxx_linux-64=11.2.0=hc2dff05_2
- h5py=3.11.0=py38hbe37b52_0
- hdf5=1.12.1=h2b7332f_3
- icu=73.2=h59595ed_0
- idna=3.7=py38h06a4308_0
- igraph=0.10.13=hef0740d_0
- importlib-metadata=7.0.1=py38h06a4308_0
- importlib-resources=6.4.5=pyhd8ed1ab_0
- importlib_metadata=7.0.1=hd3eb1b0_0
- importlib_resources=6.4.5=pyhd8ed1ab_0
- jinja2=3.1.4=py38h06a4308_0
- joblib=1.4.2=pyhd8ed1ab_0
- jpeg=9e=h5eee18b_3
- kernel-headers_linux-64=3.10.0=h57e8cba_10
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py38h7f3f72f_1
- krb5=1.20.1=h81ceb04_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.40=h12ee557_0
- legacy-api-wrap=1.4=pyhd8ed1ab_1
- leidenalg=0.10.2=py38h17151c0_0
- lerc=4.0.0=h27087fc_0
- libabseil=20240116.2=cxx17_h6a678d5_0
- libaec=1.1.3=h59595ed_0
- libblas=3.9.0=20_linux64_openblas
- libbrotlicommon=1.1.0=hb9d3cd8_2
- libbrotlidec=1.1.0=hb9d3cd8_2
- libbrotlienc=1.1.0=hb9d3cd8_2
- libcblas=3.9.0=20_linux64_openblas
- libcurl=7.88.1=h251f7ec_2
- libdeflate=1.23=h4ddbbb0_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libffi=3.4.4=h6a678d5_1
- libgcc=14.2.0=h77fa898_1
- libgcc-devel_linux-64=11.2.0=h1234567_1
- libgcc-ng=14.2.0=h69a702a_1
- libgfortran=14.2.0=h69a702a_1
- libgfortran-ng=14.2.0=h69a702a_1
- libgfortran5=14.2.0=hd5240d6_1
- libgomp=14.2.0=h77fa898_1
- libhwloc=2.11.2=default_he43201b_1000
- libiconv=1.17=hd590300_2
- libjpeg-turbo=2.1.4=h166bdaf_0
- liblapack=3.9.0=20_linux64_openblas
- libleidenalg=0.11.1=h00ab1b0_0
- libllvm11=11.1.0=he0ac6c6_5
- libllvm14=14.0.6=hcd5def8_4
- liblzma=5.6.4=hb9d3cd8_0
- libmagma=2.8.0=h9ddd185_2
- libmagma_sparse=2.8.0=h9ddd185_0
- libnghttp2=1.57.0=h2d74bed_0
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.25=pthreads_h413a1c8_0
- libpng=1.6.39=h5eee18b_0
- libprotobuf=4.25.3=he621ea3_0
- libsqlite=3.46.0=hde9e2c9_0
- libssh2=1.11.1=h251f7ec_0
- libstdcxx=14.2.0=hc0a3c3a_1
- libstdcxx-devel_linux-64=11.2.0=h1234567_1
- libstdcxx-ng=14.2.0=h4852527_1
- libtiff=4.2.0=hecacb30_2
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.5.0=h851e524_0
- libxcb=1.17.0=h8a09558_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.13.5=hfdd30dd_0
- libzlib=1.2.13=h4ab18f5_6
- llvmlite=0.41.1=py38h94a1851_0
- lz4-c=1.9.4=h6a678d5_1
- lzo=2.10=h7b6447c_2
- magma=2.8.0=h4aca40b_0
- markupsafe=2.1.3=py38h5eee18b_0
- matplotlib-base=3.7.3=py38h58ed7fa_0
- metis=5.1.0=hd0bcaf9_1007
- mpc=1.3.1=h5eee18b_0
- mpfr=4.2.1=h90cbb55_3
- mpmath=1.3.0=py38h06a4308_0
- munkres=1.1.4=pyh9f0ad1d_0
- natsort=8.4.0=pyhd8ed1ab_0
- ncurses=6.5=h2d0b736_3
- networkx=3.1=pyhd8ed1ab_0
- nomkl=1.0=h5ca1d4c_0
- numba=0.58.1=py38h4144172_0
- numexpr=2.8.4=py38hd2a5715_1
- numpy=1.24.3=py38hf838250_0
- numpy-base=1.24.3=py38h1e6e340_0
- openjpeg=2.4.0=h9ca470c_2
- openssl=3.4.1=h7b32b05_0
- packaging=23.2=pyhd8ed1ab_0
- pandas=2.0.3=py38h1128e8f_0
- patsy=0.5.6=pyhd8ed1ab_0
- pillow=10.4.0=py38h5eee18b_0
- pip=24.2=py38h06a4308_0
- platformdirs=3.10.0=py38h06a4308_0
- pooch=1.7.0=py38h06a4308_0
- pthread-stubs=0.4=hb9d3cd8_1002
- py-cpuinfo=9.0.0=py38h06a4308_0
- pynndescent=0.5.13=pyhff2d567_0
- pyparsing=3.1.4=pyhd8ed1ab_0
- pysocks=1.7.1=py38h06a4308_0
- pytables=3.8.0=py38hb8ae3fc_3
- python=3.8.20=he870216_0
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-igraph=0.11.5=py38h8746e1d_1
- python-tzdata=2023.3=pyhd3eb1b0_0
- python_abi=3.8=2_cp38
- pytorch=2.3.0=gpu_cuda118py38h796af20_101
- pytz=2024.2=pyhd8ed1ab_0
- pyyaml=6.0.2=py38h2019614_0
- readline=8.2=h5eee18b_0
- requests=2.32.3=py38h06a4308_0
- scanpy=1.10.2=pyhd8ed1ab_0
- scikit-learn=1.3.2=py38ha25d942_2
- scipy=1.10.1=py38h32ae08f_1
- seaborn=0.13.2=hd8ed1ab_2
- seaborn-base=0.13.2=pyhd8ed1ab_2
- session-info=1.0.0=pyhd8ed1ab_0
- setuptools=75.1.0=py38h06a4308_0
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.45.3=h5eee18b_0
- statsmodels=0.14.1=py38h7f0c24c_0
- stdlib-list=0.11.0=pyhd8ed1ab_0
- suitesparse=5.10.1=h5a4f163_3
- sympy=1.13.3=py38h06a4308_0
- sysroot_linux-64=2.17=h57e8cba_10
- tbb=2021.13.0=hceb3a55_1
- texttable=1.7.0=pyhd8ed1ab_0
- threadpoolctl=3.5.0=pyhc1e730c_0
- tk=8.6.14=h39e8969_0
- torchtriton=2.3.0=cuda123py38hdb19cb5_0
- tqdm=4.67.1=pyhd8ed1ab_0
- typing=3.10.0.0=py38h06a4308_0
- typing-extensions=4.11.0=py38h06a4308_0
- typing_extensions=4.11.0=py38h06a4308_0
- umap-learn=0.5.6=py38h578d9bd_1
- unicodedata2=15.1.0=py38h01eb140_0
- urllib3=2.2.3=py38h06a4308_0
- wheel=0.44.0=py38h06a4308_0
- xorg-libxau=1.0.12=hb9d3cd8_0
- xorg-libxdmcp=1.1.5=hb9d3cd8_0
- xz=5.4.6=h5eee18b_1
- yaml=0.2.5=h7b6447c_0
- zipp=3.15.0=pyhd8ed1ab_0
- zlib=1.2.13=h4ab18f5_6
- zlib-ng=2.0.7=h5eee18b_0
- zstd=1.5.6=ha6fb4c9_0
- pip:
- anyio==4.5.2
- argon2-cffi==23.1.0
- argon2-cffi-bindings==21.2.0
- arrow==1.3.0
- asttokens==3.0.0
- async-lru==2.0.4
- attrs==25.1.0
- babel==2.17.0
- backcall==0.2.0
- beautifulsoup4==4.13.3
- bleach==6.1.0
- blosc2==2.0.0
- cellbender==0.3.0
- cffi==1.17.1
- click==8.1.8
- comm==0.2.2
- cython==3.0.12
- debugpy==1.8.12
- decorator==5.1.1
- defusedxml==0.7.1
- entrypoints==0.4
- exceptiongroup==1.2.2
- executing==2.2.0
- fastjsonschema==2.21.1
- fqdn==1.5.1
- h11==0.14.0
- httpcore==1.0.7
- httpx==0.28.1
- ipykernel==6.29.5
- ipython==8.12.3
- ipython-genutils==0.2.0
- ipywidgets==8.1.5
- isoduration==20.11.0
- jedi==0.19.2
- json5==0.10.0
- jsonpointer==3.0.0
- jsonschema==4.23.0
- jsonschema-specifications==2023.12.1
- jupyter==1.1.1
- jupyter-client==7.4.9
- jupyter-console==6.6.3
- jupyter-contrib-core==0.4.2
- jupyter-contrib-nbextensions==0.7.0
- jupyter-core==5.7.2
- jupyter-events==0.10.0
- jupyter-highlight-selected-word==0.2.0
- jupyter-lsp==2.2.5
- jupyter-nbextensions-configurator==0.6.4
- jupyter-server==2.14.2
- jupyter-server-terminals==0.5.3
- jupyterlab==4.3.5
- jupyterlab-pygments==0.3.0
- jupyterlab-server==2.27.3
- jupyterlab-widgets==3.0.13
- loompy==3.0.8
- lxml==5.3.1
- matplotlib-inline==0.1.7
- mistune==0.8.4
- msgpack==1.1.0
- narwhals==1.26.0
- nbclassic==1.2.0
- nbclient==0.10.1
- nbconvert==6.5.4
- nbformat==5.10.4
- nest-asyncio==1.6.0
- notebook==6.5.7
- notebook-shim==0.2.4
- numpy-groupies==0.9.22
- opt-einsum==3.4.0
- overrides==7.7.0
- pandocfilters==1.5.1
- parso==0.8.4
- pexpect==4.9.0
- pickleshare==0.7.5
- pkgutil-resolve-name==1.3.10
- plotly==6.0.0
- prometheus-client==0.21.1
- prompt-toolkit==3.0.50
- psutil==7.0.0
- ptyprocess==0.7.0
- pure-eval==0.2.3
- pycparser==2.22
- pygments==2.19.1
- pyro-api==0.1.2
- pyro-ppl==1.9.1
- python-json-logger==3.2.1
- pyzmq==26.2.1
- referencing==0.35.1
- rfc3339-validator==0.1.4
- rfc3986-validator==0.1.1
- ridgeplot==0.1.26
- rpds-py==0.20.1
- send2trash==1.8.3
- sniffio==1.3.1
- soupsieve==2.6
- stack-data==0.6.3
- terminado==0.18.1
- tinycss2==1.4.0
- tomli==2.2.1
- tornado==6.4.2
- traitlets==5.14.3
- types-python-dateutil==2.9.0.20241206
- uri-template==1.3.0
- wcwidth==0.2.13
- webcolors==24.8.0
- webencodings==0.5.1
- websocket-client==1.8.0
- widgetsnbextension==4.0.13
prefix: /home/yoavnah/miniconda3/envs/cellbender