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22 changes: 22 additions & 0 deletions Dockerfile
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FROM python:2.7.18

# Donwnload and install RNA
RUN wget https://rna.urmc.rochester.edu/Releases/current/RNAstructureLinuxTextInterfaces64bit.tgz
RUN tar -zxvf RNAstructureLinuxTextInterfaces64bit.tgz
RUN cd RNAstructure && \
make all

ENV PATH=$PATH:/RNAstructure/exe
ENV DATAPATH=/RNAstructure/data_tables

# Setup Metaplotlib
RUN python -m pip install -U pip setuptools
RUN python -m pip install matplotlib

# Setup httplib2
RUN pip install httplib2

# Copy required files
RUN mkdir /Superfold
WORKDIR Superfold
COPY . /Superfold/
12 changes: 12 additions & 0 deletions README
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Expand Up @@ -3,6 +3,18 @@ Superfold installation, execution, and troubleshooting.
Gregg Rice 2014
gmr@unc.edu

###################################################################################
Docker build
===================================================================================
to build run:
docker build . -t superfold

to run:
mkdir data
docker run -it -v ./data:/Superfold/data superfold /bin/bash

The data directory will be "sheared" between your container and local system

###################################################################################
Requirements:

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