change process configurations#2
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Birkinshaw wants to merge 8 commits intoWEHI-ResearchComputing:mainfrom
Open
change process configurations#2Birkinshaw wants to merge 8 commits intoWEHI-ResearchComputing:mainfrom
Birkinshaw wants to merge 8 commits intoWEHI-ResearchComputing:mainfrom
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seperated Alphafold2 tasks (CountUniqueSequences, Multimer_Feature, and Multimer_Inference) to have individual resource limits for CPU, memory, queue. Also include a retry function to allow for increasing memory if it fails on those codes
fix so the pipeline doesn't exit on other error messages
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this should make the pipeline a bit more memory and cpu efficient by modifying resources for individual processes. ie. a 10 cpu 100GB vm is not required to process the input sequences |
Added process configuration for Alphafold2 with specific module. Also added appropriate time limits for jobs
suggest moving to save on space
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seperated Alphafold2 tasks (CountUniqueSequences, Multimer_Feature, and Multimer_Inference) to have individual resource limits for CPU, memory, queue. Also include a retry function to allow for increasing memory if it fails on those codes