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Choice and influence of intercept in scpModelWorkflow

Status: Open.

#95 In UCLouvain-CBIO/scp;

· michabirklbauer opened on Jun 5, 2025

Feature request: Move functions from SCP.replication to SCP

Status: Open.

#92 In UCLouvain-CBIO/scp;

· edemmott opened on May 19, 2025

scpComponentAnalysis gives PCs with all NaN for some datasets without warning

Status: Open.

#91 In UCLouvain-CBIO/scp;

· edemmott opened on May 18, 2025

Deconvoluting DIA-NN .parquet output into precursor, peptide, and protein assays?

Status: Open.

#86 In UCLouvain-CBIO/scp;

· Pedroaragon9 opened on Mar 29, 2025

Move divideByReference to MsCoreUtils and normalize,QFeatures

Status: Open.

#84 In UCLouvain-CBIO/scp;

· lgatto opened on Mar 11, 2025

Using SingleCellExperiment slows down processing on QFeatures objects

Status: Open.

#83 In UCLouvain-CBIO/scp;

· leopoldguyot opened on Mar 6, 2025

joinAssays loses protein accession column

Status: Open.

#79 In UCLouvain-CBIO/scp;

· margaretjdowns opened on Feb 21, 2025

Revisit vignettes

Status: Open.

#78 In UCLouvain-CBIO/scp;

· lgatto opened on Feb 6, 2025

Sparse arrays with NAs

Status: Open.

#75 In UCLouvain-CBIO/scp;

· lgatto opened on Oct 3, 2024

scpModel workflow/readSCP

Status: Open.

#73 In UCLouvain-CBIO/scp;

· edemmott opened on Sep 14, 2024

Implementing a QR decomposition Modeling Method for scp

Status: Open.

#71 In UCLouvain-CBIO/scp;

· leopoldguyot opened on Aug 8, 2024

Debug integration of vdiffr in GHA

Status: Open.

#69 In UCLouvain-CBIO/scp;

· cvanderaa opened on Aug 1, 2024