Generation of RTF reports extracted from ThermoFisher XML files
This script parses XML files from ThermoFisher's EPU, extracts various parameters, and writes it to a rich-text format (RTF) file.
tfs_xml2rtf.py <options>
By default, the script looks in the directory Images-Disc1 for XML files, but this default can be overridden. See below for command-line options.
These settings affect multiple steps.
| Flag | Type | Default | Description |
|---|---|---|---|
--directory |
ANY | Images-Disc1 | Top-level images directory |
--calibration |
ANY | None | Magification-calibration Excel file |
--output |
ANY | report.rtf | Output RTF report |
--no_scan |
BOOL | False | Flag to skip EER scan |
--progress |
BOOL | False | Flag to show progress bar |
--verbosity |
INT | 1 | Verbosity level (0..4) |
--debug |
BOOL | False | Debugging mode |