Repository for all metabolic modelling of Synechococcus elongatus UTEX 2973 and Caulobacter vibrioides CB2A to aid/inform engineering efforts of said microbes.
Currently, mainly flux balance analysis (FBA) using the COBRApy package.
- UTEX 2973:
- genome-scale metabolic model from Mueller, T., Ungerer, J., Pakrasi, H. et al. Identifying the Metabolic Differences of a Fast-Growth Phenotype in Synechococcus UTEX 2973. Sci Rep 7, 41569 (2017). https://doi.org/10.1038/srep41569
What are the primary analysis scripts/starting points? How would the analysis be rerun?
Give an example
A step by step series of examples that tell you how to get a development/analysis env running
Say what the step will be
Give the example
And repeat
until finished
End with an example of getting some data out of the system or using. It is also worth listing what the requirements are.
Details regarding how to contribute. Coding style conventions, use of tests, etc.
Additional notes / precatuions / etc. to make users aware of.
- README template taken from Daniel E. Cook.