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penelopeysm committed Mar 3, 2025
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2 changes: 1 addition & 1 deletion .github/workflows/CI.yml
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concurrency:
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2 changes: 1 addition & 1 deletion .github/workflows/Docs.yml
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2 changes: 1 addition & 1 deletion .github/workflows/ExperimentalTests.yml
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4 changes: 2 additions & 2 deletions .github/workflows/Format.yml
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name: Format

on:
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# Skip intermediate builds: always.
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2 changes: 1 addition & 1 deletion .github/workflows/IntegrationTests.yml
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -268,7 +268,7 @@ where `ϵ` is the step size of leapfrog integration.
### Gradients
`AdvancedHMC` supports AD-based using [`LogDensityProblemsAD`](https://github.com/tpapp/LogDensityProblemsAD.jl) and user-specified gradients. In order to use user-specified gradients, please replace `ForwardDiff` with `ℓπ_grad` in the `Hamiltonian` constructor, where the gradient function `ℓπ_grad` should return a tuple containing both the log-posterior and its gradient.

All the combinations are tested in [this file](https://github.com/TuringLang/AdvancedHMC.jl/blob/master/test/sampler.jl) except for using tempered leapfrog integrator together with adaptation, which we found unstable empirically.
All the combinations are tested in [this file](https://github.com/TuringLang/AdvancedHMC.jl/blob/main/test/sampler.jl) except for using tempered leapfrog integrator together with adaptation, which we found unstable empirically.

## The `sample` function signature in detail

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2 changes: 1 addition & 1 deletion research/notebooks/geweke_test.ipynb
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" \u001b[90m[f6369f11] \u001b[39mForwardDiff v0.10.35\n",
" \u001b[90m[7073ff75] \u001b[39mIJulia v1.24.0\n",
" \u001b[90m[6d524b87] \u001b[39mMCMCDebugging v0.2.1 `https://github.com/TuringLang/MCMCDebugging.jl#master`\n",
" \u001b[90m[6d524b87] \u001b[39mMCMCDebugging v0.2.1 `https://github.com/TuringLang/MCMCDebugging.jl#main`\n",
" \u001b[90m[91a5bcdd] \u001b[39mPlots v1.38.9\n",
" \u001b[90m[d330b81b] \u001b[39mPyPlot v2.11.1\n",
" \u001b[90m[e0db7c4e] \u001b[39mReTest v0.3.2\n",
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2 changes: 1 addition & 1 deletion research/notebooks/riemannian_hmc.ipynb
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" \u001b[90m[6a86dc24] \u001b[39mFiniteDiff v2.19.0\n",
" \u001b[90m[f6369f11] \u001b[39mForwardDiff v0.10.35\n",
" \u001b[90m[7073ff75] \u001b[39mIJulia v1.24.0\n",
" \u001b[90m[6d524b87] \u001b[39mMCMCDebugging v0.2.1 `https://github.com/TuringLang/MCMCDebugging.jl#master`\n",
" \u001b[90m[6d524b87] \u001b[39mMCMCDebugging v0.2.1 `https://github.com/TuringLang/MCMCDebugging.jl#main`\n",
" \u001b[90m[91a5bcdd] \u001b[39mPlots v1.38.9\n",
" \u001b[90m[438e738f] \u001b[39mPyCall v1.95.1\n",
" \u001b[90m[d330b81b] \u001b[39mPyPlot v2.11.1\n",
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2 changes: 1 addition & 1 deletion research/notebooks/sign_check.ipynb
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" \u001b[90m[366bfd00] \u001b[39mDynamicPPL v0.22.2\n",
" \u001b[90m[6a86dc24] \u001b[39mFiniteDiff v2.19.0\n",
" \u001b[90m[f6369f11] \u001b[39mForwardDiff v0.10.35\n",
" \u001b[90m[6d524b87] \u001b[39mMCMCDebugging v0.2.1 `https://github.com/TuringLang/MCMCDebugging.jl#master`\n",
" \u001b[90m[6d524b87] \u001b[39mMCMCDebugging v0.2.1 `https://github.com/TuringLang/MCMCDebugging.jl#main`\n",
" \u001b[90m[91a5bcdd] \u001b[39mPlots v1.38.9\n",
" \u001b[90m[d330b81b] \u001b[39mPyPlot v2.11.1\n",
" \u001b[90m[e0db7c4e] \u001b[39mReTest v0.3.2\n",
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