By Iain Visa (iainvisa@gmail.com)
Toolbox for structural analysis of proteins.
WIP EVERYTHING IS UNDER DEELOPMENT!
Many features are still not commented/documented or even mentioned. Feel free to explore and/or use any functions.
Can be downloaded from the test PiPy repository but note the used version as any function might change during development.
INFO
Relevant python code can be found in the src folder within their relevant folders.
The test is for development use, and it's contents will be definitely deleted/modified at some point.
Preset workflows are being developend, including the projectDimer workflow. (WIP)
Biopython
Works with wrappers of the main Biopython classes. Adding functionality without loosing their original value.
Includes general-purpose tools and pipelines for importing, processing, and exporting structures.
Symmetries
Also contains crystallographic data processing tools. Such as those for dealing with symmetries. (WIP)
Tools
A reworked Biopython.DSSP module is also included, as well as a PISA wrapper (WIP)
Utilities
Additionally, a large set of utilities is included, from logging, to common mathematical operations.
Visualization
For structural visualisation, a custom PyMol scripting framework is included, replacing heavy sessions with generative commands. (WIP)