This repository contains the pipelines used during the analysis and an example dataset to run the code
Used 10X genomics server to generate the count matrix.
Samples can be downloaded from Bioproject PRJNA1297365 and the validation dataset from BioProject PRJNA746586
Used Seurat and Bioconductor VDJ packages in R for downstream analysis
You can cite all versions by using the DOI 10.5281/zenodo.16669000