Update numpy to 2.2.3 with dependencies for Python 3.12 (#111)

StepicOrg · Feb 27, 2025 · 876d836 · 876d836
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commit 876d836
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diff --git a/epicbox-python/3.12/Dockerfile b/epicbox-python/3.12/Dockerfile
@@ -1,4 +1,4 @@
-FROM python:3.12.3-slim-bookworm
+FROM python:3.12.9-slim-bookworm
 MAINTAINER Stepik Team <[email protected]>
 
 ENV DEBIAN_FRONTEND=noninteractive

diff --git a/epicbox-python/3.12/requirements.in b/epicbox-python/3.12/requirements.in
@@ -4,18 +4,18 @@ stepic_utils @ https://github.com/StepicOrg/stepik-utils/archive/1.2.0.zip#sha25
 stepik_alignment @ https://github.com/StepicOrg/stepik-alignment/archive/1.1.0.zip#sha256=afcb3693fbef4b429b67d6651c4bd782bb26470821561ead0fb98e69ed45c10e
 
 sympy==1.12
-numpy==1.26.4
-scipy==1.12.0
-pandas==2.2.2
+numpy==2.2.3
+scipy==1.15.1
+pandas==2.2.3
 lxml==5.2.1
 beautifulsoup4==4.12.3
 toolz==0.12.1
 # Cython is required by scikit-image
 # Cython==0.29.26 ???
-matplotlib==3.8.4
+matplotlib==3.10.0
 networkx==3.3
-scikit-image==0.23.2
-scikit-learn==1.4.2
+scikit-image==0.25.1
+scikit-learn==1.6.1
 # rsa to check encrypted tokens
 rsa==4.9
 # natural language processing
@@ -24,8 +24,6 @@ pymorphy2==0.9.1
 pymorphy2-dicts-ru==2.4.417127.4579844
 pymystem3==0.2.0
 sumy==0.11.0
-gensim==4.3.2
-fasttext==0.9.2
 
 mip==1.14.2
 shapely==2.0.4
@@ -45,9 +43,9 @@ factory-boy==3.3
 faker==25.0.1
 hypothesis==6.100.4
 
-opencv-python-headless==4.9.0.80
+opencv-python-headless==4.11.0.86
 
-pysqlite3-binary==0.5.2.post3
+pysqlite3-binary==0.5.4
 
 # required by admin quiz
 pytest==8.2.0

diff --git a/epicbox-python/3.12/requirements.txt b/epicbox-python/3.12/requirements.txt
@@ -21,7 +21,7 @@ attrs==23.2.0
     # via hypothesis
 beautifulsoup4==4.12.3
     # via -r requirements.in
-biopython==1.83
+biopython==1.85
     # via
     #   stepic-bioinformatics
     #   stepic-common
@@ -79,8 +79,6 @@ fastapi==0.111.0
     # via -r requirements.in
 fastapi-cli==0.0.4
     # via fastapi
-fasttext==0.9.2
-    # via -r requirements.in
 flask==3.0.3
     # via
     #   -r requirements.in
@@ -95,8 +93,6 @@ flask-wtf==1.2.1
     # via -r requirements.in
 fonttools==4.51.0
     # via matplotlib
-gensim==4.3.2
-    # via -r requirements.in
 greenlet==3.0.3
     # via sqlalchemy
 h11==0.14.0
@@ -117,7 +113,7 @@ idna==3.7
     #   email-validator
     #   httpx
     #   requests
-imageio==2.34.1
+imageio==2.37.0
     # via scikit-image
 iniconfig==2.0.0
     # via pytest
@@ -155,7 +151,7 @@ marshmallow==3.21.2
     #   apispec
     #   flask-smorest
     #   webargs
-matplotlib==3.8.4
+matplotlib==3.10.0
     # via -r requirements.in
 mdurl==0.1.2
     # via markdown-it-py
@@ -175,13 +171,11 @@ nltk==3.8.1
     # via
     #   -r requirements.in
     #   sumy
-numpy==1.26.4
+numpy==2.2.3
     # via
     #   -r requirements.in
     #   biopython
     #   contourpy
-    #   fasttext
-    #   gensim
     #   imageio
     #   matplotlib
     #   opencv-python-headless
@@ -191,7 +185,7 @@ numpy==1.26.4
     #   scipy
     #   shapely
     #   tifffile
-opencv-python-headless==4.9.0.80
+opencv-python-headless==4.11.0.86
     # via -r requirements.in
 orjson==3.10.3
     # via fastapi
@@ -204,7 +198,7 @@ packaging==24.0
     #   pytest
     #   scikit-image
     #   webargs
-pandas==2.2.2
+pandas==2.2.3
     # via -r requirements.in
 pillow==10.3.0
     # via
@@ -217,8 +211,6 @@ prettytable==3.10.0
     # via -r requirements.in
 pyasn1==0.6.0
     # via rsa
-pybind11==2.12.0
-    # via fasttext
 pycosat==0.6.6
     # via -r requirements.in
 pycountry==23.12.11
@@ -244,7 +236,7 @@ pymystem3==0.2.0
     # via -r requirements.in
 pyparsing==3.1.2
     # via matplotlib
-pysqlite3-binary==0.5.2.post3
+pysqlite3-binary==0.5.4
     # via -r requirements.in
 pytest==8.2.0
     # via -r requirements.in
@@ -276,14 +268,13 @@ rich==13.7.1
     # via typer
 rsa==4.9
     # via -r requirements.in
-scikit-image==0.23.2
+scikit-image==0.25.1
     # via -r requirements.in
-scikit-learn==1.4.2
+scikit-learn==1.6.1
     # via -r requirements.in
-scipy==1.12.0
+scipy==1.15.1
     # via
     #   -r requirements.in
-    #   gensim
     #   scikit-image
     #   scikit-learn
 shapely==2.0.4
@@ -295,8 +286,6 @@ six==1.16.0
     #   flask-restful
     #   python-dateutil
     #   python-sat
-smart-open==7.0.4
-    # via gensim
 sniffio==1.3.1
     # via
     #   anyio
@@ -352,7 +341,7 @@ urllib3==2.2.1
     # via requests
 uvicorn[standard]==0.29.0
     # via fastapi
-uvloop==0.19.0
+uvloop==0.21.0
     # via uvicorn
 watchfiles==0.21.0
     # via uvicorn
@@ -366,10 +355,5 @@ werkzeug==3.0.3
     # via
     #   flask
     #   flask-smorest
-wrapt==1.16.0
-    # via smart-open
 wtforms==3.1.2
     # via flask-wtf
-
-# The following packages are considered to be unsafe in a requirements file:
-# setuptools