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Update README.md
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Add seqz and facets to readme
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ShixiangWang authored Apr 17, 2024
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Expand Up @@ -55,6 +55,10 @@ remotes::install_github("ShixiangWang/ascat@v3-for-gcap-v1", subdir = "ASCAT")
> updates in processing your data, please refer to <https://github.com/VanLoo-lab/ascat> for generating the required
> allele-specific copy number data, and refer to [`?gcap.ASCNworkflow()`](https://shixiangwang.github.io/gcap/reference/gcap.ASCNworkflow.html) for downstream analysis.
### Alternatives to ASCAT

For the latest version of GCAP, [sequenza](https://shixiangwang.github.io/gcap/reference/gcap.workflow.seqz.html) or [facets](https://shixiangwang.github.io/gcap/reference/gcap.workflow.facets.html) are supported for preprocessing the bam data, please refer to the provided links for usage.

### Install GCAP (required)

Install **gcap** in R console:
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