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Corrigindo problemas ao executar o workflow em um servidor HPC #33

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Corrigindo problemas ao executar o workflow em um servidor HPC #33

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2 changes: 1 addition & 1 deletion config/nextflow.config
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Expand Up @@ -5,7 +5,7 @@ params {
report_dir = 'report'
publish_dir_mode = 'symlink' // avoid duplicating output files (I think we should always try to use symlink instead of copy mode)
samples_csv = "$projectDir/../samples/samples.csv"
ref_genome = "$projectDir/../references/cds_from_genomic.fna"
ref_genome = "$projectDir/../references/mrna_genomic_sequence.fna" // adicionar as sequencias genomicas dos mRNAs anotados
}

// OBS: that is just a draft version; we must try to remove every 'code smell' from our code (if possible)
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2 changes: 2 additions & 0 deletions modules/downloadReadFTP.nf
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@@ -1,4 +1,6 @@
process downloadReadFTP {
maxForks 2 // limit parallel downloads: https://github.com/nextflow-io/nextflow/discussions/3415

input:
tuple val(run), path(json_file)

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