Time series #119

	name: Ortho-conda-tests

	on:
	push:
	pull_request:
	branches:
	- main

	jobs:
	setup-and-test:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2

	- name: Setup Miniconda
	uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true
	python-version: 3.9
	activate-environment: geoCosiCorr3D
	environment-file: geoCosiCorr3D.yml
	auto-activate-base: false

	- name: Configure LD_LIBRARY_PATH
	run: echo "LD_LIBRARY_PATH=$(pwd)/lib/:$LD_LIBRARY_PATH" >> $GITHUB_ENV

	- name: Activate Conda Environment
	shell: bash
	run: \|
	CONDA_PATH=$(which conda)
	echo "Conda executable path: $CONDA_PATH"

	CONDA_DIR=$(dirname $(dirname $CONDA_PATH))
	echo "Conda directory: $CONDA_DIR"

	source $CONDA_DIR/etc/profile.d/conda.sh
	conda activate geoCosiCorr3D

	- name: Check conda env
	run: conda env list

	- name: Check Env
	run: echo $LD_LIBRARY_PATH

	- name : Run Tests
	run: \|
	conda run -n geoCosiCorr3D pytest tests/test_geoOrtho.py

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