Upgrade Core part1

[multiflexi]

This upgrades core container to current Python libs and fixes quite a few issues. It also adds progress bar for file loading in CLI. This should be followed by SQLAlchemy migration to version 2.0.

[Progress1]

• Upgrade: Python (3.10 -> 3.13), Alpine (3.14 -> 3.20)
• Migrate libraries to latest working versions and fix broken functionality (Manage..)
• Fixed Collector node creating (Error: missing 1 required positional argument: 'id')
• Move Collector, Presenter, Publisher & Bot configurations to shared. This helps us for future work like add new parameters with updates, refresh old parameters etc.. Currently this is not possible, only with recreating new node and deleting old but at cost of data loose.
• Create Default Collector node even if Collector docker is offline
• Automatic Collector node creation is tuned up, better logs, timeout processing, hints what's going on..
• Better loading CVE, CPE, CWE files (progress bar)
• Code documentation