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Plant-Food-Research-Open

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  1. assemblyqc assemblyqc Public

    A Nextflow pipeline for evaluating assembly quality

    Nextflow 30 6

  2. genepal genepal Public

    A Nextflow pipeline for genome and pan-genome annotation

    Nextflow 10 6

  3. moiraine moiraine Public

    An R package to construct Multi-Omics Integration Reproducible Analyses in R.

    R 4 1

  4. FieldNBalance FieldNBalance Public

    Nitrogen balance model components and test procedures

    Jupyter Notebook 2 4

  5. calisim calisim Public

    A toolbox for the calibration and evaluation of simulation models.

    Python 1 1

  6. TEgenomeSimulator TEgenomeSimulator Public

    TEgenomeSimulator: A tool to simulate TE mutation and insertion into a random-synthesised or user-provided genome.

    Python 1 1

Repositories

Showing 8 of 8 repositories
  • calisim Public

    A toolbox for the calibration and evaluation of simulation models.

    Python 1 Apache-2.0 1 0 5 Updated Mar 17, 2025
  • assemblyqc Public

    A Nextflow pipeline for evaluating assembly quality

    Nextflow 30 MIT 6 24 (1 issue needs help) 0 Updated Mar 13, 2025
  • genepal Public

    A Nextflow pipeline for genome and pan-genome annotation

    Nextflow 10 MIT 6 32 1 Updated Mar 9, 2025
  • TEgenomeSimulator Public

    TEgenomeSimulator: A tool to simulate TE mutation and insertion into a random-synthesised or user-provided genome.

    Python 1 GPL-3.0 1 0 0 Updated Feb 4, 2025
  • moiraine Public

    An R package to construct Multi-Omics Integration Reproducible Analyses in R.

    R 4 1 0 0 Updated Jan 22, 2025
  • moiraine-manual Public

    User manual for the moiraine R package

    R 0 MIT 0 0 0 Updated Aug 11, 2024
  • FieldNBalance Public

    Nitrogen balance model components and test procedures

    Jupyter Notebook 2 GPL-3.0 4 2 (1 issue needs help) 0 Updated Jul 16, 2024
  • HEImiRA-pipeline Public

    Host Environment Intersection miRNA Annotation pipeline

    Nextflow 0 GPL-3.0 0 0 0 Updated Jun 20, 2023