Tutorial commands (temporary)

Create a local copy of the XCP Engine.

git clone https://github.com/PennBBL/xcpEngine.git

Edit your .bash_profile to include:

export XCPEDIR={the directory where you installed XCP}

Reset the XCP global settings.

./xcpReset

Begin design setup.

./xcpConfig

Example cohort path:

/data/joy/BBL-extend/xcpWorkshop/config/cohort.csv

Template:

/data/joy/BBL-extend/xcpWorkshop/input/template/PNCtemplate2mm.nii.gz

Running an analysis:

$XCPEDIR/xcpEngine -d ${MY_DESIGN} -m c

Example output:

/data/joy/BBL-extend/xcpWorkshop/output/rest_rciric/rest_rciric_201702150950/