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{"name":"PRIDE-R","tagline":"R libraries for the European Bioinformatics Institute PRIDE project","body":"PRIDE-R\r\n======\r\n\r\nA collection of R tools to access the European Bioinformatics Institute [PRIDE project](http://www.ebi.ac.uk/pride) resources, including [PRIDE Archive](http://www.ebi.ac.uk/pride/ws/archive) and [PRIDE Cluster](http://wwwdev.ebi.ac.uk/pride/ws/cluster) web services, together with different data products based on them.  \r\n\r\nCurrently, the following projects are ongoing:  \r\n\r\n* [prideR](http://pride-r.github.io/prideR): an R package to access PRIDE Archive and PRIDE Cluster  \r\n* [PRIDE Archive trends](http://pride-r.github.io/archive-annual-trends/): Exploratory data analysis and visualisation of PRIDE Archive submissions trends over the years.   \r\n* [PRIDE Archive project tagger](http://pride-r.github.io/project-tagger/): The PRIDE Archive uses a system of tags to classify datasets. So far these tags are manually assigned by curators. By trying to build a model that predict tags, we want to find out what are behind those tags in terms of dataset metadata and natuarl language description.  \r\n* [prideRcompare](http://pride-r.github.io/prideRcompare): Compare, distance, and clustering for prideR projects.   \r\n\r\n### About us   \r\n\r\nFind out about us in our GitHub profiles:  \r\n[Jose A. Dianes](https://github.com/jadianes)  \r\n[Rui Wang](https://github.com/ruiwanguk)  \r\n\r\n### How to cite\r\n\r\n* Vizcaíno, J. A., Côté, R. G., Csordas, A., Dianes, J. A., Fabregat, A., Foster, J. M., ... & Hermjakob, H. (2013). *The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013*. Nucleic acids research, 41(D1), D1063-D1069. [HERE](http://www.nature.com/nbt/journal/v32/n3/full/nbt.2839.html)  \r\n","google":"","note":"Don't delete this file! It's used internally to help with page regeneration."}