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Expand and tidy up test coverage#81

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hartytp merged 62 commits intomasterOxfordIonTrapGroup/atomic_physics:masterfrom tph/testsOxfordIonTrapGroup/atomic_physics:tph/testsCopy head branch name to clipboardJan 7, 2025

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Commits on Jan 1, 2025

• tidy up magnetic dipole and expansion coefficients tests

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• ac_zeeman_shift_for_transition: remove unused parameter

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• ac_zeeman_shift_for_state: calculate differential ac zeeman shift not the total shift on the two states!

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Commits on Jan 2, 2025

• TestUtils -> TestACZeeman

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• tests.test_atom: restructure and clean up tests for Atom

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• ions: always give values for Ahfs/Bhfs rather than using None when we don't know them

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• atoms: always give values for Ahfs/Bhfs rather than using None when we don't know them

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Commits on Jan 3, 2025

• ions: always give values for Ahfs/Bhfs rather than using None when we don't know them

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• ions: fix a few typos

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• Fix F, M_F sorting algorithm

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• ions: fix more typos

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• WIP MI MI sorting algorithm

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• Atom: fix get_state_for_xxx functions

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• add test for M_I_MJ sorting

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• Fix AC Zeeman shift calculation

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• tests/test_atom: ba133 typo

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• tests/test_utils: updated acz tests for ca40 and ca43

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• formatting

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• tests/test_utils: light formatting

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Commits on Jan 4, 2025

• ions\ca3: add missing Bhfs

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• add operators.expectation_value

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• tests: expand test_atom

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• formatting

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• Atom: small bits of refactoring, remove get_populations method which was not very useful

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• update changes

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Commits on Jan 5, 2025

• fix types

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• test_atom: fix tests

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• Atom: add levels field

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• update change log

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• test_atom: check that the level data stores the right level

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• Ca43: fix transition frequencies

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• test_atom: add check for 729 saturation intensity back int

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• test_atom_factory: add test on level sorting

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• update changes

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• update poetry

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• add test for atom_factory level filtering

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• add test for level_data

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• add basic sanity checks on all pre-defined atoms

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• utils: fix Rayleight range calculation

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• test_utils: expand testing

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• tidy up tests

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• tidy up tests

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• tidy up AC Zeeman shift tests

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• Tidy up tests for 43Ca+.

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• ca43: add measured gJ for the D5/2 level

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• fmt

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• add a more complex test of the ac zeeman shift

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• tidy up mg25 tests

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• test mg25: slacken tolerance until we figure out why the numbers don't match RS's thesis

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• remove incorrect docstring

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Commits on Jan 6, 2025

• utils: field_insensitive_point - do not use negative magnetic fields

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• rename Jp -> AngularMomentumRaisingOp etc for clarity

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• examples: fix typo

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• slightly tidy up maths in Atom

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• Atom: use operators.expectation_value

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• add tests for operators

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Commits on Jan 7, 2025

• polarization: make Jones matrices 3D

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• finish tests for polarization

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• remove unused test for bloch equations (should not have been committed)

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• rename get_rabi_m1 to get_rabi_rf

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• add new Atom.get_states_for_level method

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• contributing: add a note about tests and documentation

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