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rkboyce merged 1 commit into from
May 12, 2026
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Update README with new links and improved wording #48

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18 changes: 12 additions & 6 deletions README.md
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This repository is building an agent-style interface for common OHDSI study design tasks. The current implementation is strongest in two areas:

- phenotype recommendation for target and outcome cohort selection
- Phenotype recommendation for target and outcome cohort selection
- Keeper-assisted concept generation, profile extraction, and row adjudication for phenotype validation

- R demos of using workflows that call the ACP/MCP flows to design strategus incidence rate and cohort method analyses

[![Watch the video](https://github.com/user-attachments/assets/1679912f-fcbb-4dbf-830e-ce493188e8db)](https://pitt.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=eaaf0e5f-d60f-4b9a-a521-b42c016b1af3)

[![The new `/ohdsi` feature](https://github.com/user-attachments/assets/ab9d39e2-af4f-4d32-a4a4-d20df17b2f1c)](https://pitt.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=77e8b162-4116-4d61-9e00-b4480104b886)

The project separates orchestration from deterministic tooling:

Expand Down Expand Up @@ -58,10 +59,15 @@ Related implemented flows:
This same recommendation path is already wired into the R Strategus incidence shell and the cohort-method shell.

Primary references:

- [docs/PHENOTYPE_RECOMMENDATION_DESIGN.md](docs/PHENOTYPE_RECOMMENDATION_DESIGN.md)
- [docs/STRATEGUS_SHELL.md](docs/STRATEGUS_SHELL.md)
- [docs/INCIDENCE_WORKFLOW.md](docs/INCIDENCE_WORKFLOW.md)
- [docs/TESTING.md](docs/TESTING.md)
- [docs/WORKFLOW_PHENOTYPE_RECOMMENDATION.md](docs/WORKFLOW_PHENOTYPE_RECOMMENDATION.md)
- [docs/PHENOTYPE_VALIDATION_REVIEW.md](docs/PHENOTYPE_VALIDATION_REVIEW.md)
- [docs/SPEC_KEEPER_INTERFACE.md](docs/SPEC_KEEPER_INTERFACE.md)
- [docs/R_STRATEGUS_INCIDENCE_SHELL.md](docs/R_STRATEGUS_INCIDENCE_SHELL.md)
- [docs/R_STRATEGUS_COHORT_METHODS_SHELL.md](docs/R_STRATEGUS_COHORT_METHODS_SHELL.md)
- [docs/WORKFLOW_INCIDENCE.md](docs/WORKFLOW_INCIDENCE.md)
- [docs/ROADMAP.md](docs/ROADMAP.md)
- [docs/R_PACKAGE_ARCHITECTURE_PLAN.md](docs/R_PACKAGE_ARCHITECTURE_PLAN.md)

### 2. Keeper-Assisted Phenotype Validation

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