Features/slash ohdsi extension#47

Merged

rkboyce merged 20 commits into

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features/slash-ohdsi-extension

May 12, 2026

Commits on May 11, 2026

initial git status clean up - stragglers
rkboyce
committed
the first clean-refactor to refactor the R code into two slashOhdsi ("/ohdsi") packages
rkboyce
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migrated the incidence shell to the same interactive `/ohdsi` model as the cohort-method shell in [R/OHDSIAssistant/R/strategus_incidence_shell.R](/ai-agent/HadesProject/OHDSI-Study-Agent/R/OHDSIA…
rkboyce
committed
moved the remaining workflow-specific dialogue mapping out of `OHDSIAssistant` and into [workflow_dialogue_mapping.R](/ai-agent/HadesProject/OHDSI-Study-Agent/R/slashOhdsiStrategusAssistant/R/workf…
rkboyce
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Completion of the new slashOhdsiAcpClient and slashOhdsiStrategusAssistant R packages. OHDSIAssistant remains as a shim until the other packages are tested
rkboyce
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Completed the work needed to remove OHDSIAssistant and replace with the 2 new R packages. Updated the R test scripts and added a new one
rkboyce
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Fixed a bug where selected_ids_outcome was referenced in Step 3 of the incidence shell before it had been initialized
rkboyce
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fixed a bug with cohort ID remapping
rkboyce
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Added a ported manual launcher at scripts/demo_strategus_cohort_method
rkboyce
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fixed a HADES API compatibility problem
rkboyce
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Brings full keeper functionality back in but using the ACP and with /ohdsi support and interactive features
rkboyce
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Added TAR selection to incidence shell
rkboyce
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Commits on May 12, 2026