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### License | ||
The entire MSFragger suite of tools (MSFragger-Core, MSFragger-LOS, MSFragger-Glyco, MSFragger-DIA, MSFragger-Labile), collectively known as "MSFragger", is distributed as a single JAR file. It is available freely for __academic research__, __non-commercial__ or __educational__ purposes under [academic license](https://msfragger.arsci.com/upgrader/MSFragger-LICENSE.pdf). | ||
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Other uses require a __commercial__ license after the initial 60-day evaluation period that can be obtained by contacting Drew Bennett ([email protected]) at the University of Michigan Office of Tech Transfer. For questions, please contact Prof. Alexey Nesvizhskii ([email protected]). | ||
Other uses require a __commercial__ license after the initial [60-day evaluation](https://available-inventions.umich.edu/make-order/msfragger-ultrafast-and-comprehensive-identification-of-peptides-from-tandem-mass-spectra/859) period that can be obtained by contacting Drew Bennett ([email protected]) at the University of Michigan Office of Tech Transfer. For the commercial licensing details (e.g. pricing), please also contact Drew Bennett ([email protected]). For other questions, please contact Prof. Alexey Nesvizhskii ([email protected]). | ||
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### Download MSFragger | ||
Whether you run use FragPipe, Proteome Discoverer (PD, Thermo Scientific), or the command line, you will need to download the latest MSFragger JAR file. See instructions for [downloading or upgrading MSFragger](https://github.com/Nesvilab/MSFragger/wiki/Preparing-MSFragger#Downloading-MSFragger). | ||
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