alignment

Spatial registration of calcium imaging datasets to reference images.

Setup

To create a conda environment using the provided environment.yml file, follow these steps:

1. Open a terminal.
2. Navigate to the directory containing the environment.yml file:

   cd alignment

3. Create the conda environment:

   conda env create -f environment.yml

4. Activate the newly created environment:

   conda activate alignment

You are now ready to use the alignment environment.

Note

The files in the registration folder are from the Naumann Lab scopeslip repository.