Add taca config for ONT deliveries

NationalGenomicsInfrastructure · Dec 11, 2024 · c2e640b · c2e640b
1 parent 562365f
commit c2e640b
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Showing 2 changed files with 16 additions and 0 deletions.
diff --git a/roles/taca/tasks/main.yml b/roles/taca/tasks/main.yml
@@ -44,6 +44,7 @@
     - { config_tpl: "taca_cleanup", config_dst: "taca_cleanup", item_type: cleanup, config_site: ["sthlm"] }
     - { config_tpl: "app_specific_delivery", config_dst: "taca_fastq_delivery", item_type: fastq, config_site: ["sthlm"] }
     - { config_tpl: "taca_runfolder_delivery", config_dst: "taca_runfolder_delivery", item_type: runfolder, config_site: ["sthlm"] }
+    - { config_tpl: "taca_ont_delivery", config_dst: "taca_ont_delivery", config_site: ["sthlm"] }
     - { config_tpl: "app_specific_delivery", config_dst: "taca_rna_delivery", item_type: rna, config_site: ["sthlm"] }
     - { config_tpl: "app_specific_delivery", config_dst: "taca_denovo_delivery", item_type: denovo, config_site: ["sthlm"] }
 

diff --git a/roles/taca/templates/site_taca_ont_delivery.yml.j2 b/roles/taca/templates/site_taca_ont_delivery.yml.j2
@@ -0,0 +1,15 @@
+log:
+    file: "{{ ngi_pipeline_path }}/log/taca.log"
+
+organise:
+  incoming_path: "{{ proj_root }}/{{ uppmax_project }}/incoming"
+  nanopore_path: "{{ proj_root }}/{{ uppmax_project }}/nobackup/NGI/ONT_TAR"
+  illumina_path: "{{ proj_root }}/{{ uppmax_project }}/nobackup/NGI/DATA"
+  element_path: "{{ proj_root }}/{{ uppmax_project }}/nobackup/NGI/DATA"
+
+delivery:
+  data_locations:
+    - "{{ proj_root }}/{{ uppmax_project }}/nobackup/NGI/ONT_TAR"
+    - "{{ proj_root }}/{{ uppmax_project }}/nobackup/NGI/DATA"
+    - "{{ proj_root }}/{{ uppmax_project }}/nobackup/NGI/ANALYSIS"
+  staging_path: "{{ proj_root }}/{{ uppmax_project }}/nobackup/NGI/DELIVERY"