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Update/lexevs 5290 #36

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86c7f60
Merge pull request #394 from lexevs/v6.5.5
cendle Feb 10, 2022
164a7a6
LEXEVS-5246. Initial commit. Updated pom.
Apr 15, 2022
841c087
LEXEVS-5246. Updated portion dao to SqlSessionTemplate
Apr 15, 2022
f05786b
Automated conversion
safrant Apr 18, 2022
950ade3
LEXEVS-5246. Refactored most simple ibatis configurations. Some batch…
Apr 18, 2022
c84af7e
myIbatis xml first pass manual
safrant Apr 18, 2022
d42f924
Partial myIbatis fix
safrant Apr 18, 2022
44a317c
Merge pull request #396 from lexevs/update/LEXEVS-5245
Apr 19, 2022
b2ca0df
LEXEVS-5245
safrant Apr 19, 2022
9ad01fc
LEXEVS-5246. Updating tests to compile only. Changing call back impl…
Apr 19, 2022
f33ec04
Updating caching values, correcting some xml. Updating hibernate jpa…
Apr 20, 2022
63289f5
LEXEVS-5246. Resolving dependency and spring injection issues
Apr 21, 2022
897ff72
LEXEVS-5246. Adding test, junit update
Apr 21, 2022
59885d2
LEXEVS-5246. Updating target sql xml configs. Removing old implemen…
Apr 22, 2022
f15a992
LEXEVS-5246. Fixing mybatis configs, adding a type handler. adding a…
Apr 25, 2022
4028a4e
LEXEVS-5246. Updated ibatis xml to correct issues with typehandler an…
Apr 26, 2022
406d2c1
LEXEVS-5246. Updated configurations for codingscheme and typehandler
Apr 27, 2022
c5c0f34
LEXEVS-5246. Updating logging config
Apr 28, 2022
7e99ccf
LEXEVS-5246. Updating values to promote loading including adding Pref…
Apr 28, 2022
d10317e
LEXEVS-5246. Query tests coding scheme dao
May 2, 2022
cff3b55
LEXEVS-5246. CodingSchemeDao query tests complete. Fixed a prefix pa…
May 3, 2022
b60d3fa
Update all to Java 8
safrant May 5, 2022
38e3dc2
Premerge commit
safrant May 5, 2022
060478e
LEXEVS-5246. Updating Registry DAO to actively handle session for up…
May 6, 2022
ad8bc10
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant May 6, 2022
8fe187a
Update eclipse cp to Java 8
safrant May 6, 2022
aa59bc0
LEXEVS-5246. Updating some of the URIMap transforms and configuratati…
May 6, 2022
160a3cd
LEXEVS-5246. Configuration and correction of transform and mapping of…
May 9, 2022
14ee060
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant May 10, 2022
ffd01bc
LEXEVS-5246. Updating Property transformation to accomodate MyBatis …
May 11, 2022
9b34af8
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant May 11, 2022
dbb826e
LEXEVS-5246. Fixing a property type value issue
May 11, 2022
a616f88
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant May 11, 2022
541600b
Update IbatisAssociationTests
safrant May 11, 2022
e288ab3
ddlutils test
safrant May 11, 2022
5ca0d51
LEXEVS-5246. Commiting updates to relation table insert reconfigurati…
May 12, 2022
85a5e1a
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant May 12, 2022
3e28201
Updating entityDaoTest to Mybatis
safrant May 12, 2022
34b5473
LEXEVS-5246. Configuration and correction in entity dao insert
May 12, 2022
239d480
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant May 13, 2022
8a84f67
LEXEVS-5246. Fixing a variety of index related query mechanisms
May 16, 2022
f4e7a99
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant May 16, 2022
f327538
LEXEVS-5246. Fixing a variety of index related query mechanisms
May 16, 2022
4e69d61
LEXEVS-5246. Some minor adjustments to the configuration of coding s…
May 17, 2022
69b97bc
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant May 17, 2022
3f3350f
Association Tests
safrant May 17, 2022
ab7e9d5
Add commons-cli to lbTest ivy
safrant May 18, 2022
aa648bd
remove .DS_Store
safrant May 18, 2022
29f25d5
LEXEVS-5246. Adding some fixes to the rrf batch load
May 18, 2022
482fc57
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant May 19, 2022
b54f74f
LexEVS-5254 IbatisEntityDaoTest
safrant May 19, 2022
9ca5030
LEXEVS-5264
safrant May 20, 2022
dc5343d
Final update and verification of association dao, association data da…
May 20, 2022
3b559ba
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant May 20, 2022
b965a9d
LEXEVS-5246. Adding verification of the association target dao tests
May 20, 2022
204018e
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant May 23, 2022
fb9b1b5
LEXEVS-5246. Updates to spring batch framework.
May 23, 2022
c0976f5
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant May 23, 2022
c4b5b13
LexEVS 5271
safrant May 23, 2022
0331303
LEXEVS-5246. Spring Batch basic functionality is complete
May 24, 2022
1ad4804
LEXEVS-5246. Updating parameter beans and contexts for spring update
May 27, 2022
d8a2d82
LEXEVS-5246. Updating parameter beans and contexts for spring update
May 27, 2022
15e7f7c
LEXEVS-5246. Updating NCI History Dao for new spring version -- addin…
May 31, 2022
8a3f624
LEXEVS-5246. finishing test/validation of NCI History Dao
Jun 1, 2022
72d328d
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant Jun 1, 2022
69fc7e6
LEXEVS-5271
safrant Jun 1, 2022
d72ac45
LEXEVS-5271
safrant Jun 1, 2022
0d03ab5
LEXEVS-5246. removing close statements that were breaking some Mybati…
Jun 1, 2022
f6e7682
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant Jun 1, 2022
cb49705
LEXEVS-5246. Fixing the obo load by refactoring the foreach statement…
Jun 1, 2022
bddead5
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant Jun 1, 2022
d4b77a0
LexEVS-5271 continued test improvements
safrant Jun 3, 2022
c1dec78
LEXEVS-5246. Committing some configurations to solve caching/batch im…
Jun 3, 2022
099998a
LEXEVS-5271
safrant Jun 6, 2022
8116dd6
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant Jun 6, 2022
256fbde
LEXEVS-5271 - Add compare to TripleNode
safrant Jun 7, 2022
883051d
LEXEVS-5246. Fixing association data mapping
Jun 7, 2022
7c72b89
Merge branch 'update/LEXEVS-5254' into update/LEXEVS-5246
Jun 7, 2022
1c3c3b4
LEXEVS-5271 TripleUids Pre and Post
safrant Jun 7, 2022
1dc9b62
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant Jun 7, 2022
8dd85a0
LEXEVS-5271
safrant Jun 8, 2022
9a3ac2f
LEXEVS-5246. Providing a batch implementation compatible with Mybatis…
Jun 9, 2022
4d70c10
Merge remote-tracking branch 'origin/update/LEXEVS-5246' into update/…
safrant Jun 9, 2022
f50358b
LEXEVS-5272
safrant Jun 9, 2022
ce46368
LexEVS-5272 continue valueset testsing
safrant Jun 13, 2022
b974269
LEXEVS-5272 complete valueset
safrant Jun 14, 2022
4b605f0
LEXEVS-5246. Trial work towards a new batch implementation
Jun 17, 2022
5be2057
LEXEVS-5246. Creating first pass for a modern batch inserter.
Jun 24, 2022
27b0c9e
Merge branch 'update/LEXEVS-5254' into update/LEXEVS-5246
Jun 24, 2022
5981b60
LEXEVS-5246. Changes to coded node graph configuration to create cond…
Jun 29, 2022
0a28f1a
Committing updates`
Jul 6, 2022
c090c75
LEXEVS-5246. Commiting updates to NCI History Dao for Mybatis configu…
Jul 6, 2022
67018e6
LEXEVS-5246. Fixing an issue with entity property resolution using mi…
Jul 6, 2022
eeec5eb
LEXEVS-5246. Fixing the sql implemented methods, tree extension
Jul 7, 2022
08108fe
LEXEVS-5246. Commiting corrections to order based test that were not …
Jul 8, 2022
7bbcd87
LEXEVS-5246. Fixing an syntax error in the associations ibatis query …
Jul 8, 2022
4fd14ac
LEXEVS-5246. Adding a restrict to anonymous restriction where anon va…
Jul 8, 2022
5fb0231
LEXEVS-5246. Mapping extension sorting updates. The sort implmentati…
Jul 12, 2022
f6f6625
LEXEVS-5246. Fixing some broken sql config, adding some best practise…
Jul 15, 2022
a46c9c8
LEXEVS-5246
safrant Jul 21, 2022
4a6a144
Merge pull request #397 from lexevs/update/LEXEVS-5246
Jul 21, 2022
373574a
Build RC1
safrant Jul 25, 2022
5ec0685
Removing a zip64 configuration for the lexbig.jar that was causing a …
Aug 4, 2022
ec5cfc7
LEXEVS-5290. Forcing an compile on a method return type change, fixin…
Aug 8, 2022
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LEXEVS-5246. Resolving dependency and spring injection issues
hsbauer committed Apr 21, 2022
commit 63289f5c14b2947bfc7a40707f44166feca73eea
16 changes: 10 additions & 6 deletions lexevs-dao/ivy.xml
Original file line number Diff line number Diff line change
@@ -31,7 +31,7 @@
<dependency org="org.codehaus.castor" name="castor-xml" rev="1.3.1" conf="default"/>
<dependency org="org.easymock" name="easymock" rev="2.4" conf="default"/>
<dependency org="org.easymock" name="easymockclassextension" rev="2.4" conf="default"/>
<dependency org="asm" name="asm" rev="3.1" conf="default"/>
<dependency org="org.ow2.asm" name="asm" rev="9.3" conf="default"/>
<dependency org="cglib" name="cglib" rev="2.2" conf="default" />
<dependency org="org.aspectj" name="aspectjrt" rev="1.7.2" conf="default"/>
<dependency org="org.aspectj" name="aspectjweaver" rev="1.7.2" conf="default"/>
@@ -46,6 +46,7 @@
<dependency org="org.springframework" name="spring-beans" rev="5.3.19" conf="default" />
<dependency org="org.springframework" name="spring-jdbc" rev="5.3.19" conf="default" />
<dependency org="org.springframework" name="spring-orm" rev="5.3.19" conf="default" />
<dependency org="org.springframework" name="spring-orm" type="sources" rev="5.3.19" conf="default"/>
<dependency org="org.springframework.retry" name="spring-retry" rev="1.3.2" conf="default" />
<dependency org="org.springframework" name="spring-tx" rev="5.3.19" conf="default" />
<dependency org="org.springframework" name="spring-asm" rev="3.1.4.RELEASE" conf="default" />
@@ -58,8 +59,9 @@
<dependency org="org.mybatis" name="mybatis" rev="3.5.9" conf="default" />
<dependency org="org.mybatis.dynamic-sql" name="mybatis-dynamic-sql" rev="1.4.0" conf="default" />
<dependency org="org.hibernate" name="hibernate-core" rev="5.6.8.Final" conf="default" />
<dependency org="org.hibernate.common" name="hibernate-commons-annotations" rev="4.0.0.Final" conf="default" />
<dependency org="org.jboss.logging" name="jboss-logging" rev="3.1.2.GA" conf="default" />
<dependency org="net.bytebuddy" name="byte-buddy-dep" rev="1.12.9" conf="default" />
<dependency org="org.hibernate.common" name="hibernate-commons-annotations" rev="5.1.2.Final" conf="default" />
<dependency org="org.jboss.logging" name="jboss-logging" rev="3.4.3.Final" conf="default" />
<dependency org="org.hibernate.javax.persistence" name="hibernate-jpa-2.1-api" rev="1.0.2.Final" conf="default" />
<dependency org="org.hibernate" name="hibernate-ehcache" rev="5.6.8.Final" conf="default" />
<dependency org="javax.annotation" name="jsr250-api" rev="1.0" conf="default" />
@@ -82,7 +84,7 @@
<dependency org="commons-io" name="commons-io" rev="2.6" conf="default" />
<dependency org="commons-dbcp" name="commons-dbcp" rev="1.4" conf="default" />
<dependency org="commons-logging" name="commons-logging" rev="1.1.1" conf="default"/>
<dependency org="javax.persistence" name="persistence-api" rev="1.0" conf="default->*"/>
<dependency org="javax.persistence" name="javax.persistence-api" rev="2.2" conf="default->*"/>
<dependency org="org.mockito" name="mockito-all" rev="1.10.8" conf="default"/>
<dependency org="org.jdom" name="jdom" rev="1.1" conf="default->*"/>
<dependency org="commons-codec" name="commons-codec" rev="1.10" conf="default"/>
@@ -99,13 +101,15 @@
<!-- https://mvnrepository.com/artifact/com.arangodb/velocypack -->
<dependency org="com.arangodb" name="velocypack" rev="1.4.2" conf="default"/>
<!-- https://mvnrepository.com/artifact/com.fasterxml.jackson.core/jackson-core -->
<dependency org="com.fasterxml.jackson.core" name="jackson-core" rev="2.10.0.pr2" conf="default"/>
<dependency org="com.fasterxml.jackson.core" name="jackson-core" rev="2.13.2" conf="default"/>
<!-- https://mvnrepository.com/artifact/com.fasterxml.jackson.core/jackson-databind -->
<dependency org="com.fasterxml.jackson.core" name="jackson-databind" rev="2.10.0.pr2" conf="default"/>
<dependency org="com.fasterxml.jackson.core" name="jackson-databind" rev="2.13.2.2" conf="default"/>
<!-- https://mvnrepository.com/artifact/org.codehaus.jackson/jackson-core-asl -->
<dependency org="org.codehaus.jackson" name="jackson-core-asl" rev="1.9.13" conf="default"/>
<!-- https://mvnrepository.com/artifact/org.codehaus.jackson/jackson-mapper-asl -->
<dependency org="org.codehaus.jackson" name="jackson-mapper-asl" rev="1.9.13" conf="default"/>
<dependency org="com.fasterxml" name="classmate" rev="1.5.1" conf="default"/>


</dependencies>
</ivy-module>
14 changes: 6 additions & 8 deletions lexevs-dao/src/main/resources/lexevsDao.xml
Original file line number Diff line number Diff line change
@@ -38,7 +38,8 @@
</bean>

<bean id="abstractIbatisDao" abstract="true">
<property name="sqlMapClientTemplate" ref="sqlMapClientTemplate"/>
<property name="sqlSessionTemplate" ref="sqlSessionTemplate"/>
<property name="sqlSessionBatchTemplate" ref="sqlSessionBatchTemplate"/>
<property name="prefixResolver" ref="defaultPrefixResolver"/>
<property name="primaryKeyIncrementer" ref="primaryKeyIncrementer"/>
</bean>
@@ -457,11 +458,6 @@
<ref bean="dataSource" />
</property>
</bean>

<bean id="sqlMapClientTemplate" class="org.springframework.orm.ibatis.SqlMapClientTemplate">
<property name="dataSource" ref="dataSource"/>
<property name="sqlMapClient" ref="sqlMap"/>
</bean>

<bean id="sqlSessionTemplate" class="org.mybatis.spring.SqlSessionTemplate">
<constructor-arg ref="sqlSessionFactory" />
@@ -477,8 +473,6 @@
<property name="mapperLocations" value="classpath*:resources/ibatis.v20/**/*.xml" />
</bean>

<bean id="executorType" class="org.apache.ibatis.session.ExecutorType"/>

<bean id="abstractResourceManagerVariableFactory"
class="org.lexevs.system.constants.IndividualVariableFactory"
abstract="true">
@@ -498,6 +492,10 @@
</bean>

<bean id="hibernateRegistryDao" class="org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao">
<property name="hibernateTemplate" ref="hibernateTemplate"/>
</bean>

<bean id="hibernateTemplate" class="org.springframework.orm.hibernate5.HibernateTemplate">
<property name="sessionFactory" ref="registrySessionFactory"/>
</bean>