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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.
README.md

About

A distributed national bioinformatics infrastructure supporting life sciences in Sweden

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 241 81

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 15

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    18 9

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 220 106

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 209 47

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 315 repositories
  • workshop-ngsintro Public

    Workshop • Intro to Bioinformatics using NGS data • 5 days

    NBISweden/workshop-ngsintro’s past year of commit activity
    HTML 14 GPL-3.0 7 0 0 Updated Mar 11, 2025
  • workshop-data-visualization-r Public

    Materials for NBIS workshop on data visulalization

    NBISweden/workshop-data-visualization-r’s past year of commit activity
    HTML 2 GPL-3.0 2 2 0 Updated Mar 11, 2025
  • workshop-mlbiostatistics Public
    NBISweden/workshop-mlbiostatistics’s past year of commit activity
    HTML 15 8 0 0 Updated Mar 11, 2025
  • swefreq Public

    Swedish Frequency resource for genomics website

    NBISweden/swefreq’s past year of commit activity
    Python 7 GPL-3.0 1 0 10 Updated Mar 11, 2025
  • urdr Public

    Timelogging system of NBIS

    NBISweden/urdr’s past year of commit activity
    TypeScript 0 AGPL-3.0 1 54 23 Updated Mar 11, 2025
  • scQC Public

    Single cell QC analysis pipeline

    NBISweden/scQC’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Mar 10, 2025
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli’s past year of commit activity
    Go 5 AGPL-3.0 1 47 0 Updated Mar 10, 2025
  • bacmet Public
    NBISweden/bacmet’s past year of commit activity
    0 0 3 1 Updated Mar 10, 2025
  • data-submission-documentation Public

    Documentation for data submissions from life science research in public repositories

    NBISweden/data-submission-documentation’s past year of commit activity
    Python 3 0 0 5 Updated Mar 10, 2025
  • bp-sweden-web Public

    Website for BigPicture Sweden

    NBISweden/bp-sweden-web’s past year of commit activity
    SCSS 0 MIT 0 1 2 Updated Mar 7, 2025
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