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Mmasoud1 committed Dec 28, 2023
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[![MIT-License ](https://img.shields.io/badge/license-MIT-green)](https://github.com/Mmasoud1/HistoJS/blob/main/LICENSE) [![Python ](https://img.shields.io/badge/python-3.5%20%7C%203.6%20%7C%203.7-blue)]()[![JS ](https://img.shields.io/badge/Types-JavaScript-blue)]()
[![HW ](https://img.shields.io/badge/HardWare-GPU-green)]()

**[Demo](https://mmasoud1.github.io/HistoJS)   [Updates](#Updates)   [Doc](https://github.com/mmasoud1/HistoJS/wiki/)**

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HistoJS is a new web-based interactive tool designed to overcome the challenges of using highly-multiplexed immunofluorescence (HMIF) images for spatial biology research. HistoJS provides open-source and extensible tools for analyzing spatial-molecular patterns, offering a deeper understanding of single-cell spatial relationships. It also features machine learning algorithms in a user-friendly interactive interface for the biomedical community.

The tool can manage, store, and analyze the multi-channel OME-Tiff files using Digital Slide Archive as a backbone to update the image metadata remotely or locally.

HistoJS is an interactive tool to manage, store and analysis the multi-channels OME-Tiff files.

The tool is using Digital Slide Archive as a backbone to update the image metadata remotely or locally.

## Live Demo

HistoJS [Demo](https://mmasoud1.github.io/HistoJS).

### Design Mode

For creating OME channel groups, browse to your server file and click design mode with the tool.
## Updates

![App Interface](https://github.com/Mmasoud1/HistoJS/blob/main/Demo/DesignMode.gif)
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![Interface](https://github.com/mmasoud1/HistoJS/blob/main/Demo/AnalysisMode.gif)


**HistoJS V1.0.0 design mode **
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<br>

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![Interface](https://github.com/mmasoud1/HistoJS/blob/main/Demo/DesignMode.gif)

**HistoJS V1.0.0 analysis mode**
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### Analysis Mode
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![App Interface](https://github.com/Mmasoud1/HistoJS/blob/main/Demo/AnalysisMode.gif)

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