Version 1.1.1

BioFVM/BioFVM.h

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+/*
+#############################################################################
+# If you use BioFVM in your project, please cite BioFVM and the version     #
+# number, such as below:                                                    #
+#                                                                           #
+# We solved the diffusion equations using BioFVM (Version 1.1.5) [1]        #
+#                                                                           #
+# [1] A. Ghaffarizadeh, S.H. Friedman, and P. Macklin, BioFVM: an efficient #
+#    parallelized diffusive transport solver for 3-D biological simulations,#
+#    Bioinformatics 32(8): 1256-8, 2016. DOI: 10.1093/bioinformatics/btv730 #
+#                                                                           #
+#############################################################################
+#                                                                           #
+# BSD 3-Clause License (see https://opensource.org/licenses/BSD-3-Clause)   #
+#                                                                           #
+# Copyright (c) 2015-2017, Paul Macklin and the BioFVM Project              #
+# All rights reserved.                                                      #
+#                                                                           #
+# Redistribution and use in source and binary forms, with or without        #
+# modification, are permitted provided that the following conditions are    #
+# met:                                                                      #
+#                                                                           #
+# 1. Redistributions of source code must retain the above copyright notice, #
+# this list of conditions and the following disclaimer.                     #
+#                                                                           #
+# 2. Redistributions in binary form must reproduce the above copyright      #
+# notice, this list of conditions and the following disclaimer in the       #
+# documentation and/or other materials provided with the distribution.      #
+#                                                                           #
+# 3. Neither the name of the copyright holder nor the names of its          #
+# contributors may be used to endorse or promote products derived from this #
+# software without specific prior written permission.                       #
+#                                                                           #
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS       #
+# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED #
+# TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A           #
+# PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER #
+# OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,  #
+# EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,       #
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR        #
+# PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF    #
+# LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING      #
+# NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS        #
+# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.              #
+#                                                                           #
+#############################################################################
+*/
+
+#ifndef __BioFVM_h__
+#define __BioFVM_h__
+
+#include <iostream>
+#include <fstream>
+
+namespace BioFVM{
+extern std::string BioFVM_Version; 
+extern std::string BioFVM_URL; 
+};
+
+#include "BioFVM_utilities.h" 
+#include "BioFVM_vector.h" 
+#include "BioFVM_vector.h" 
+#include "BioFVM_mesh.h"
+#include "BioFVM_microenvironment.h"
+#include "BioFVM_solvers.h"
+#include "BioFVM_basic_agent.h" 
+
+
+#endif