GitHub - MagdalenaMat/Cbs_Br_and

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Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
.DS_Store		.DS_Store
170627_NS500418_0625_AH2FFVBGX3.raw_reads.R		170627_NS500418_0625_AH2FFVBGX3.raw_reads.R
2016_2017_NOT_batch_corrected_CBx_macrophage.R		2016_2017_NOT_batch_corrected_CBx_macrophage.R
2016_2017_batch_corrected_CBx_macrophage.R		2016_2017_batch_corrected_CBx_macrophage.R
2016_2017_batch_correted_magda_megaclasses.R		2016_2017_batch_correted_magda_megaclasses.R
20180120_Cb_Monocytes_analysis.R		20180120_Cb_Monocytes_analysis.R
20180219_Cb_Monocytes_analysis.R		20180219_Cb_Monocytes_analysis.R
20180318_not_batch_corr_Mac.R		20180318_not_batch_corr_Mac.R
20180321_Tcell_analysis_not_batch_corr.R		20180321_Tcell_analysis_not_batch_corr.R
All_data_analysis_after_decon.R		All_data_analysis_after_decon.R
CD4Tcells_NOT_batch_corrected.R		CD4Tcells_NOT_batch_corrected.R
CD8Tcell_notBC_batches_2016_2017.R		CD8Tcell_notBC_batches_2016_2017.R
Cb_res_analysis-copy.R		Cb_res_analysis-copy.R
Dim_Red_decon.R		Dim_Red_decon.R
FactoMineR.Rmd		FactoMineR.Rmd
Fractions_all_breast_heatmaps.R		Fractions_all_breast_heatmaps.R
GSEA.R		GSEA.R
HI_Res_Cib_analysis.R		HI_Res_Cib_analysis.R
Neutrophils_Cb.R		Neutrophils_Cb.R
PCA_contributions_factoextra.R		PCA_contributions_factoextra.R
QC_CiberX.R		QC_CiberX.R
T_cell_Cb.R		T_cell_Cb.R
Tcell_CD4_CD8_separate.R		Tcell_CD4_CD8_separate.R
Tcell_analysis_after_decon.R		Tcell_analysis_after_decon.R
Tcell_notBC_batches_2016_2017.R		Tcell_notBC_batches_2016_2017.R
chloe_megaclasses_2016_2017_batches_macrophages.R		chloe_megaclasses_2016_2017_batches_macrophages.R
dotplot.R		dotplot.R
heatmap_macrophage_polarizing_cytokines.R		heatmap_macrophage_polarizing_cytokines.R
heatmaply.R		heatmaply.R
htest.R		htest.R
macrophage_specific_GE_analysis_CD8CD4_sep_run.R		macrophage_specific_GE_analysis_CD8CD4_sep_run.R
nlogpv_plot.R		nlogpv_plot.R
penotypes.R		penotypes.R
pheno_rudenski.R		pheno_rudenski.R
pipeline1.R		pipeline1.R
plot_bulk.R		plot_bulk.R
plot_fractions.R		plot_fractions.R
plot_fractions_August_ex.R		plot_fractions_August_ex.R
plot_rudenski_pheno.R		plot_rudenski_pheno.R
prepare.data.for.deconv.PCA.batch.corr.R		prepare.data.for.deconv.PCA.batch.corr.R
prepare_data_for_CBx_years_2016_2017.R		prepare_data_for_CBx_years_2016_2017.R
prostate_data_PCA_and_prep_for_Cb.R		prostate_data_PCA_and_prep_for_Cb.R
set_row_col.R		set_row_col.R
visualize_fractions.R		visualize_fractions.R
volcano_plot.R		volcano_plot.R
volcano_with_repelled_labels.R		volcano_with_repelled_labels.R
z_score_heatmap.R		z_score_heatmap.R