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* add go target to makefile for quick debug run * do not pass data from cli to avoid mistaken return code * return 0 if data or 1 if empty * fixup! return 0 if data or 1 if empty * fix direct python execution, too * explicit error code for None output
* update JOSS paper details and DOI * set JOSS paper as preferred citation * add bibtex links from: doi.org/([^\)]*)\)$ to: doi.org/), [BibTeX](https://doi2bib.org/bib/) * fix indentation for mkdocs * readd abstract and links to cff * add SPARC RPP * readd license to cff * fixup! readd abstract and links to cff
* unpin to allow numpy 2 * lock deps * replace numpy trapz, now trapezoid, with scipy trapezoid * avoid MDSplus fallback for numpy errors * fixup! avoid MDSplus fallback for numpy errors * double getattr for resilience
#523) * Add DataConnection and ProcessConnection ABCs Introduce abstract base classes for the backend abstraction layer. DataConnection defines the per-shot data access interface (get_data, get_data_with_dims, get_dims, cleanup). ProcessConnection defines the per-process factory interface (get_shot_connection, from_config). Signed-off-by: Sameer Chaturvedi <sameerc@mit.edu> * Adapt MDSConnection to implement DataConnection ABC ProcessMDSConnection now inherits from ProcessConnection. MDSConnection now inherits from DataConnection. shot_id is a property, get_data/get_data_with_dims/get_dims accept group as alias for tree_name, and get_dims returns tuple instead of list. Signed-off-by: Sameer Chaturvedi <sameerc@mit.edu> * Split XarrayConnection into process-level and per-shot classes ProcessXarrayConnection(ProcessConnection) holds config and creates per-shot XarrayDataConnection(DataConnection) instances, replacing the old pattern where get_shot_connection() returned self. Adds get_data_with_dims() and get_dims() to the Xarray backend. cleanup() now closes the DataTree. Backward compat alias preserved. Signed-off-by: Sameer Chaturvedi <sameerc@mit.edu> * Update consumers to use DataConnection and ProcessConnection ABCs Migrates all type annotations, imports, and call sites from concrete MDSConnection/XarrayConnection to the ABCs introduced in commits 1-3. MAST physics methods now use the per-shot DataConnection interface (dropping shot_id from call signatures), and get_mdsplus_class() is renamed to get_process_connection() with a deprecated alias. Signed-off-by: Sameer Chaturvedi <sameerc@mit.edu> * add shebangs * Address PR #523 review feedback - Drop deprecated aliases (XarrayConnection, get_mdsplus_class) - Restore machine-specific type hints (MDSConnection for EAST, XarrayDataConnection for MAST) - Fix ProcessXarrayConnection.__init__ to initialize attrs before early return - Update XarrayDataConnection.get_data return type annotation to match actual behavior - Update examples/mdsplus.py to use get_process_connection Signed-off-by: Sameer Chaturvedi <sameerc@mit.edu> --------- Signed-off-by: Sameer Chaturvedi <sameerc@mit.edu> Co-authored-by: Gregorio L. Trevisan <gtrevisan@users.noreply.github.com>
…nd-agnostic DataConnection (#534) * Rename mds_conn to data_conn to reflect backend-agnostic DataConnection ABC Signed-off-by: Sameer Chaturvedi <sameerc@mit.edu> * Add docs page for DataConnection/ProcessConnection ABCs Fixes unresolved mkdocs cross-reference to DataConnection introduced in the data_conn rename. The base module had no mkdocstrings block, so autorefs couldn't resolve the link. * really minor whitespace changes * minor docstring and comment changes * minor rename of process variables --------- Signed-off-by: Sameer Chaturvedi <sameerc@mit.edu> Co-authored-by: gtrevisan <gtrevisan@users.noreply.github.com>
Bumps [actions/deploy-pages](https://github.com/actions/deploy-pages) from 4 to 5. - [Release notes](https://github.com/actions/deploy-pages/releases) - [Commits](actions/deploy-pages@v4...v5) --- updated-dependencies: - dependency-name: actions/deploy-pages dependency-version: '5' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* fix DummyDatabase.query * add draft of DIII-D rundb pre-fetcher * lower logging to debug * slightly improve readability of df to dict transform * Revert "fix DummyDatabase.query" This reverts commit 09165c8. * write to unique dir, cache to parent
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DIII-D
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